Gene : Phvul.003G107400 P. vulgaris v2.1
Defline:  (1 of 4) PTHR11945//PTHR11945:SF164 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1080
Name:  ? Phvul.003G107400 Secondary Identifier:  ? PAC:37148315
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G107400 0.5kb upstream 0.5kb upstream 1049 true Chr03: 27265885-27266933 Phaseolus vulgaris
Phvul.003G107400 0.5kb upstream 0.5kb upstream 500 false Chr03: 27265885-27266384 Phaseolus vulgaris
Phvul.003G107400 0.5kb downstream 0.5kb downstream 1049 true Chr03: 27266385-27267433 Phaseolus vulgaris
Phvul.003G107400 0.5kb downstream 0.5kb downstream 500 false Chr03: 27266934-27267433 Phaseolus vulgaris
Phvul.003G107400 1.0kb upstream 1.0kb upstream 1549 true Chr03: 27265385-27266933 Phaseolus vulgaris
Phvul.003G107400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 27265385-27266384 Phaseolus vulgaris
Phvul.003G107400 1.0kb downstream 1.0kb downstream 1549 true Chr03: 27266385-27267933 Phaseolus vulgaris
Phvul.003G107400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 27266934-27267933 Phaseolus vulgaris
Phvul.003G107400 2.0kb upstream 2.0kb upstream 2549 true Chr03: 27264385-27266933 Phaseolus vulgaris
Phvul.003G107400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 27264385-27266384 Phaseolus vulgaris
Phvul.003G107400 2.0kb downstream 2.0kb downstream 2549 true Chr03: 27266385-27268933 Phaseolus vulgaris
Phvul.003G107400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 27266934-27268933 Phaseolus vulgaris
Phvul.003G107400 5.0kb upstream 5.0kb upstream 5549 true Chr03: 27261385-27266933 Phaseolus vulgaris
Phvul.003G107400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 27261385-27266384 Phaseolus vulgaris
Phvul.003G107400 5.0kb downstream 5.0kb downstream 5549 true Chr03: 27266385-27271933 Phaseolus vulgaris
Phvul.003G107400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 27266934-27271933 Phaseolus vulgaris
Phvul.003G107400 10.0kb upstream 10.0kb upstream 10549 true Chr03: 27256385-27266933 Phaseolus vulgaris
Phvul.003G107400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 27256385-27266384 Phaseolus vulgaris
Phvul.003G107400 10.0kb downstream 10.0kb downstream 10549 true Chr03: 27266385-27276933 Phaseolus vulgaris
Phvul.003G107400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 27266934-27276933 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311915 5265 Fabidae View MSA
124073225 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.149297 0.0 0.687198 Low  
cufflinks 0.135575 0.0 0.628499 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.159643 0.0 0.726853 Low  
cufflinks 0.0572794 0.0 0.290019 Low Low
cufflinks 0.0866481 0.0 0.420863 Low  
cufflinks 0.390739 0.0 1.64117   High
cufflinks 0.0740116 0.0 0.367175 Low  

0 Strain