Gene : Phvul.003G107500 P. vulgaris v2.1
Defline:  (1 of 16) K01213 - galacturan 1,4-alpha-galacturonidase (E3.2.1.67) Genomic Order:  1081
Name:  ? Phvul.003G107500 Secondary Identifier:  ? PAC:37147714
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1081 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G107500 0.5kb upstream 0.5kb upstream 2758 true Chr03: 27267537-27270294 Phaseolus vulgaris
Phvul.003G107500 0.5kb upstream 0.5kb upstream 500 false Chr03: 27269795-27270294 Phaseolus vulgaris
Phvul.003G107500 0.5kb downstream 0.5kb downstream 2758 true Chr03: 27267037-27269794 Phaseolus vulgaris
Phvul.003G107500 0.5kb downstream 0.5kb downstream 500 false Chr03: 27267037-27267536 Phaseolus vulgaris
Phvul.003G107500 1.0kb upstream 1.0kb upstream 3258 true Chr03: 27267537-27270794 Phaseolus vulgaris
Phvul.003G107500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 27269795-27270794 Phaseolus vulgaris
Phvul.003G107500 1.0kb downstream 1.0kb downstream 3258 true Chr03: 27266537-27269794 Phaseolus vulgaris
Phvul.003G107500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 27266537-27267536 Phaseolus vulgaris
Phvul.003G107500 2.0kb upstream 2.0kb upstream 4258 true Chr03: 27267537-27271794 Phaseolus vulgaris
Phvul.003G107500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 27269795-27271794 Phaseolus vulgaris
Phvul.003G107500 2.0kb downstream 2.0kb downstream 4258 true Chr03: 27265537-27269794 Phaseolus vulgaris
Phvul.003G107500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 27265537-27267536 Phaseolus vulgaris
Phvul.003G107500 5.0kb upstream 5.0kb upstream 7258 true Chr03: 27267537-27274794 Phaseolus vulgaris
Phvul.003G107500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 27269795-27274794 Phaseolus vulgaris
Phvul.003G107500 5.0kb downstream 5.0kb downstream 7258 true Chr03: 27262537-27269794 Phaseolus vulgaris
Phvul.003G107500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 27262537-27267536 Phaseolus vulgaris
Phvul.003G107500 10.0kb upstream 10.0kb upstream 12258 true Chr03: 27267537-27279794 Phaseolus vulgaris
Phvul.003G107500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 27269795-27279794 Phaseolus vulgaris
Phvul.003G107500 10.0kb downstream 10.0kb downstream 12258 true Chr03: 27257537-27269794 Phaseolus vulgaris
Phvul.003G107500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 27257537-27267536 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310493 5265 Fabidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.2576 0.0 80.8813    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 22.5632 0.0 58.4376    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0211814 0.0 0.103737 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.020696 0.0 0.102156 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain