Gene : Phvul.003G093100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11088//PTHR11088:SF34 - TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  933
Name:  ? Phvul.003G093100 Secondary Identifier:  ? PAC:37144724
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-2681 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G093100 0.5kb upstream 0.5kb upstream 2357 true Chr03: 20723484-20725840 Phaseolus vulgaris
Phvul.003G093100 0.5kb upstream 0.5kb upstream 500 false Chr03: 20723484-20723983 Phaseolus vulgaris
Phvul.003G093100 0.5kb downstream 0.5kb downstream 2357 true Chr03: 20723984-20726340 Phaseolus vulgaris
Phvul.003G093100 0.5kb downstream 0.5kb downstream 500 false Chr03: 20725841-20726340 Phaseolus vulgaris
Phvul.003G093100 1.0kb upstream 1.0kb upstream 2857 true Chr03: 20722984-20725840 Phaseolus vulgaris
Phvul.003G093100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 20722984-20723983 Phaseolus vulgaris
Phvul.003G093100 1.0kb downstream 1.0kb downstream 2857 true Chr03: 20723984-20726840 Phaseolus vulgaris
Phvul.003G093100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 20725841-20726840 Phaseolus vulgaris
Phvul.003G093100 2.0kb upstream 2.0kb upstream 3857 true Chr03: 20721984-20725840 Phaseolus vulgaris
Phvul.003G093100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 20721984-20723983 Phaseolus vulgaris
Phvul.003G093100 2.0kb downstream 2.0kb downstream 3857 true Chr03: 20723984-20727840 Phaseolus vulgaris
Phvul.003G093100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 20725841-20727840 Phaseolus vulgaris
Phvul.003G093100 5.0kb upstream 5.0kb upstream 6857 true Chr03: 20718984-20725840 Phaseolus vulgaris
Phvul.003G093100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 20718984-20723983 Phaseolus vulgaris
Phvul.003G093100 5.0kb downstream 5.0kb downstream 6857 true Chr03: 20723984-20730840 Phaseolus vulgaris
Phvul.003G093100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 20725841-20730840 Phaseolus vulgaris
Phvul.003G093100 10.0kb upstream 10.0kb upstream 11857 true Chr03: 20713984-20725840 Phaseolus vulgaris
Phvul.003G093100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 20713984-20723983 Phaseolus vulgaris
Phvul.003G093100 10.0kb downstream 10.0kb downstream 11857 true Chr03: 20723984-20735840 Phaseolus vulgaris
Phvul.003G093100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 20725841-20735840 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313090 5265 Fabidae View MSA
124067788 5270 Rosid View MSA
123742235 5271 Pentapetalae View MSA
122793817 5272 Eudicot View MSA
122042275 5273 Angiosperm View MSA
121309945 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0649706 0.0 0.287193 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0781809 0.0 0.34075 Low  
cufflinks 0.0356141 0.0 0.165433 Low Low
cufflinks 5.73505 0.0 16.375   High
cufflinks 0.0831042 0.0 0.358588 Low  
cufflinks 5.93736 0.0 16.7757   High
cufflinks 2.09836 0.0 6.71868    
cufflinks 12.2303 0.0 32.5133   High
cufflinks 0.0229476 0.0 0.11327 Low Low
cufflinks 2.21573 0.0 7.04167    

0 Strain