Gene : Phvul.003G092000 P. vulgaris v2.1
Defline:  (1 of 466) PF13041 - PPR repeat family (PPR_2) Genomic Order:  949
Name:  ? Phvul.003G092000 Secondary Identifier:  ? PAC:37147267
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G092000 0.5kb upstream 0.5kb upstream 4469 true Chr03: 21560282-21564750 Phaseolus vulgaris
Phvul.003G092000 0.5kb upstream 0.5kb upstream 500 false Chr03: 21564251-21564750 Phaseolus vulgaris
Phvul.003G092000 0.5kb downstream 0.5kb downstream 4469 true Chr03: 21559782-21564250 Phaseolus vulgaris
Phvul.003G092000 0.5kb downstream 0.5kb downstream 500 false Chr03: 21559782-21560281 Phaseolus vulgaris
Phvul.003G092000 1.0kb upstream 1.0kb upstream 4969 true Chr03: 21560282-21565250 Phaseolus vulgaris
Phvul.003G092000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 21564251-21565250 Phaseolus vulgaris
Phvul.003G092000 1.0kb downstream 1.0kb downstream 4969 true Chr03: 21559282-21564250 Phaseolus vulgaris
Phvul.003G092000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 21559282-21560281 Phaseolus vulgaris
Phvul.003G092000 2.0kb upstream 2.0kb upstream 5969 true Chr03: 21560282-21566250 Phaseolus vulgaris
Phvul.003G092000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 21564251-21566250 Phaseolus vulgaris
Phvul.003G092000 2.0kb downstream 2.0kb downstream 5969 true Chr03: 21558282-21564250 Phaseolus vulgaris
Phvul.003G092000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 21558282-21560281 Phaseolus vulgaris
Phvul.003G092000 5.0kb upstream 5.0kb upstream 8969 true Chr03: 21560282-21569250 Phaseolus vulgaris
Phvul.003G092000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 21564251-21569250 Phaseolus vulgaris
Phvul.003G092000 5.0kb downstream 5.0kb downstream 8969 true Chr03: 21555282-21564250 Phaseolus vulgaris
Phvul.003G092000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 21555282-21560281 Phaseolus vulgaris
Phvul.003G092000 10.0kb upstream 10.0kb upstream 13969 true Chr03: 21560282-21574250 Phaseolus vulgaris
Phvul.003G092000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 21564251-21574250 Phaseolus vulgaris
Phvul.003G092000 10.0kb downstream 10.0kb downstream 13969 true Chr03: 21550282-21564250 Phaseolus vulgaris
Phvul.003G092000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 21550282-21560281 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306783 5265 Fabidae View MSA
124063635 5270 Rosid View MSA
123750862 5271 Pentapetalae View MSA
122792992 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.65635 0.0 5.79884    
cufflinks 1.36154 0.0 4.96244    
cufflinks 2.19049 0.0 7.23408   High
cufflinks 1.27853 0.0 7.07683   Low
cufflinks 1.46457 0.0 5.31237    
cufflinks 2.2598 0.0 7.40771   High
cufflinks 1.40811 0.0 7.70705    
cufflinks 1.58226 0.0 5.52107    
cufflinks 1.37649 0.0 5.03916    
cufflinks 1.85949 0.0 6.36445    
cufflinks 1.36515 0.0 4.98573    

0 Strain