Gene : Phvul.003G096400 P. vulgaris v2.1
Defline:  (1 of 2) 1.1.1.35//4.2.1.17//4.2.1.55//5.1.2.3//5.3.3.8 - 3-hydroxyacyl-CoA dehydrogenase / Beta-keto-reductase // Enoyl-CoA hydratase / Unsaturated acyl-CoA hydratase // 3-hydroxybutyryl-CoA dehydratase / Crotonase // Dodecenoyl-CoA isomerase / Dodecenoyl-CoA Delta-isomerase Genomic Order:  873
Name:  ? Phvul.003G096400 Secondary Identifier:  ? PAC:37145651
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Sequence Feature Displayer

Ontology Annotation Displayer

11 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ILEUDEG-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-5136 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5137 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5138 Phaseolus vulgaris pathologic  
Pvulgaris PWY-561 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6435 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6837 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7036 Phaseolus vulgaris pathologic  
Pvulgaris PWY-735 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7606 Phaseolus vulgaris pathologic  
Pvulgaris VALDEG-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G096400 0.5kb upstream 0.5kb upstream 8869 true Chr03: 15464861-15473729 Phaseolus vulgaris
Phvul.003G096400 0.5kb upstream 0.5kb upstream 500 false Chr03: 15473230-15473729 Phaseolus vulgaris
Phvul.003G096400 0.5kb downstream 0.5kb downstream 8869 true Chr03: 15464361-15473229 Phaseolus vulgaris
Phvul.003G096400 0.5kb downstream 0.5kb downstream 500 false Chr03: 15464361-15464860 Phaseolus vulgaris
Phvul.003G096400 1.0kb upstream 1.0kb upstream 9369 true Chr03: 15464861-15474229 Phaseolus vulgaris
Phvul.003G096400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 15473230-15474229 Phaseolus vulgaris
Phvul.003G096400 1.0kb downstream 1.0kb downstream 9369 true Chr03: 15463861-15473229 Phaseolus vulgaris
Phvul.003G096400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 15463861-15464860 Phaseolus vulgaris
Phvul.003G096400 2.0kb upstream 2.0kb upstream 10369 true Chr03: 15464861-15475229 Phaseolus vulgaris
Phvul.003G096400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 15473230-15475229 Phaseolus vulgaris
Phvul.003G096400 2.0kb downstream 2.0kb downstream 10369 true Chr03: 15462861-15473229 Phaseolus vulgaris
Phvul.003G096400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 15462861-15464860 Phaseolus vulgaris
Phvul.003G096400 5.0kb upstream 5.0kb upstream 13369 true Chr03: 15464861-15478229 Phaseolus vulgaris
Phvul.003G096400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 15473230-15478229 Phaseolus vulgaris
Phvul.003G096400 5.0kb downstream 5.0kb downstream 13369 true Chr03: 15459861-15473229 Phaseolus vulgaris
Phvul.003G096400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 15459861-15464860 Phaseolus vulgaris
Phvul.003G096400 10.0kb upstream 10.0kb upstream 18369 true Chr03: 15464861-15483229 Phaseolus vulgaris
Phvul.003G096400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 15473230-15483229 Phaseolus vulgaris
Phvul.003G096400 10.0kb downstream 10.0kb downstream 18369 true Chr03: 15454861-15473229 Phaseolus vulgaris
Phvul.003G096400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 15454861-15464860 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301704 5265 Fabidae View MSA
124061936 5270 Rosid View MSA
123740661 5271 Pentapetalae View MSA
122785876 5272 Eudicot View MSA
122047259 5273 Angiosperm View MSA
121345387 5274 Embryophyte View MSA
123424743 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 158.797 0.0 505.406 High High
cufflinks 38.6443 0.0 102.983 High  
cufflinks 20.6273 0.0 53.3948    
cufflinks 31.1722 0.0 81.5496    
cufflinks 31.9821 0.0 83.8704    
cufflinks 18.8995 0.0 48.8698   Low
cufflinks 34.5016 0.0 91.3087 High  
cufflinks 49.2673 0.0 134.86 High  
cufflinks 32.4195 0.0 85.2852 High  
cufflinks 126.812 0.0 387.214 High High
cufflinks 26.4866 0.0 68.9371    

0 Strain