Gene : Phvul.003G090900 P. vulgaris v2.1
Defline:  (1 of 1) 2.7.7.60 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / MEP cytidylyltransferase Genomic Order:  960
Name:  ? Phvul.003G090900 Secondary Identifier:  ? PAC:37145464
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7560 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G090900 0.5kb upstream 0.5kb upstream 7039 true Chr03: 21776889-21783927 Phaseolus vulgaris
Phvul.003G090900 0.5kb upstream 0.5kb upstream 500 false Chr03: 21776889-21777388 Phaseolus vulgaris
Phvul.003G090900 0.5kb downstream 0.5kb downstream 7039 true Chr03: 21777389-21784427 Phaseolus vulgaris
Phvul.003G090900 0.5kb downstream 0.5kb downstream 500 false Chr03: 21783928-21784427 Phaseolus vulgaris
Phvul.003G090900 1.0kb upstream 1.0kb upstream 7539 true Chr03: 21776389-21783927 Phaseolus vulgaris
Phvul.003G090900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 21776389-21777388 Phaseolus vulgaris
Phvul.003G090900 1.0kb downstream 1.0kb downstream 7539 true Chr03: 21777389-21784927 Phaseolus vulgaris
Phvul.003G090900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 21783928-21784927 Phaseolus vulgaris
Phvul.003G090900 2.0kb upstream 2.0kb upstream 8539 true Chr03: 21775389-21783927 Phaseolus vulgaris
Phvul.003G090900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 21775389-21777388 Phaseolus vulgaris
Phvul.003G090900 2.0kb downstream 2.0kb downstream 8539 true Chr03: 21777389-21785927 Phaseolus vulgaris
Phvul.003G090900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 21783928-21785927 Phaseolus vulgaris
Phvul.003G090900 5.0kb upstream 5.0kb upstream 11539 true Chr03: 21772389-21783927 Phaseolus vulgaris
Phvul.003G090900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 21772389-21777388 Phaseolus vulgaris
Phvul.003G090900 5.0kb downstream 5.0kb downstream 11539 true Chr03: 21777389-21788927 Phaseolus vulgaris
Phvul.003G090900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 21783928-21788927 Phaseolus vulgaris
Phvul.003G090900 10.0kb upstream 10.0kb upstream 16539 true Chr03: 21767389-21783927 Phaseolus vulgaris
Phvul.003G090900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 21767389-21777388 Phaseolus vulgaris
Phvul.003G090900 10.0kb downstream 10.0kb downstream 16539 true Chr03: 21777389-21793927 Phaseolus vulgaris
Phvul.003G090900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 21783928-21793927 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299722 5265 Fabidae View MSA
124060576 5270 Rosid View MSA
123739794 5271 Pentapetalae View MSA
122786593 5272 Eudicot View MSA
122044265 5273 Angiosperm View MSA
121344499 5274 Embryophyte View MSA
123424809 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.7045 0.0 28.8691    
cufflinks 18.2463 0.0 47.5889    
cufflinks 23.8512 0.0 61.6994   High
cufflinks 30.7703 0.0 79.5353   High
cufflinks 13.1252 0.0 35.0398    
cufflinks 23.7153 0.0 61.3797   High
cufflinks 10.4297 0.0 28.2058    
cufflinks 15.7248 0.0 41.2082    
cufflinks 18.3317 0.0 47.8308    
cufflinks 8.97042 0.0 24.5888   Low
cufflinks 9.57322 0.0 26.1812   Low

0 Strain