Gene : Phvul.003G081800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11850:SF100 - HOMEOBOX PROTEIN SHOOT MERISTEMLESS Genomic Order:  824
Name:  ? Phvul.003G081800 Secondary Identifier:  ? PAC:37146774
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G081800 0.5kb upstream 0.5kb upstream 5639 true Chr03: 13510856-13516494 Phaseolus vulgaris
Phvul.003G081800 0.5kb upstream 0.5kb upstream 500 false Chr03: 13515995-13516494 Phaseolus vulgaris
Phvul.003G081800 0.5kb downstream 0.5kb downstream 5639 true Chr03: 13510356-13515994 Phaseolus vulgaris
Phvul.003G081800 0.5kb downstream 0.5kb downstream 500 false Chr03: 13510356-13510855 Phaseolus vulgaris
Phvul.003G081800 1.0kb upstream 1.0kb upstream 6139 true Chr03: 13510856-13516994 Phaseolus vulgaris
Phvul.003G081800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 13515995-13516994 Phaseolus vulgaris
Phvul.003G081800 1.0kb downstream 1.0kb downstream 6139 true Chr03: 13509856-13515994 Phaseolus vulgaris
Phvul.003G081800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 13509856-13510855 Phaseolus vulgaris
Phvul.003G081800 2.0kb upstream 2.0kb upstream 7139 true Chr03: 13510856-13517994 Phaseolus vulgaris
Phvul.003G081800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 13515995-13517994 Phaseolus vulgaris
Phvul.003G081800 2.0kb downstream 2.0kb downstream 7139 true Chr03: 13508856-13515994 Phaseolus vulgaris
Phvul.003G081800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 13508856-13510855 Phaseolus vulgaris
Phvul.003G081800 5.0kb upstream 5.0kb upstream 10139 true Chr03: 13510856-13520994 Phaseolus vulgaris
Phvul.003G081800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 13515995-13520994 Phaseolus vulgaris
Phvul.003G081800 5.0kb downstream 5.0kb downstream 10139 true Chr03: 13505856-13515994 Phaseolus vulgaris
Phvul.003G081800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 13505856-13510855 Phaseolus vulgaris
Phvul.003G081800 10.0kb upstream 10.0kb upstream 15139 true Chr03: 13510856-13525994 Phaseolus vulgaris
Phvul.003G081800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 13515995-13525994 Phaseolus vulgaris
Phvul.003G081800 10.0kb downstream 10.0kb downstream 15139 true Chr03: 13500856-13515994 Phaseolus vulgaris
Phvul.003G081800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 13500856-13510855 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313225 5265 Fabidae View MSA
124072037 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.40592 0.0 6.38037    
cufflinks 1.44619 0.0 6.49491    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.06902 0.0 5.25851    
cufflinks 14.9651 0.0 45.6397   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.158743 0.0 1.162 Low  
cufflinks 0.0350075 0.0 0.165956 Low Low
cufflinks 0.724431 0.0 3.86341    
cufflinks 0.685483 0.0 3.77175    
cufflinks 8.25001 0.0 26.6561   High

0 Strain