Gene : Phvul.003G075900 P. vulgaris v2.1
Defline:  (1 of 1) K12839 - survival of motor neuron-related-splicing factor 30 (SMNDC1, SPF30) Genomic Order:  763
Name:  ? Phvul.003G075900 Secondary Identifier:  ? PAC:37147366
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G075900 0.5kb upstream 0.5kb upstream 9322 true Chr03: 12000563-12009884 Phaseolus vulgaris
Phvul.003G075900 0.5kb upstream 0.5kb upstream 500 false Chr03: 12009385-12009884 Phaseolus vulgaris
Phvul.003G075900 0.5kb downstream 0.5kb downstream 9322 true Chr03: 12000063-12009384 Phaseolus vulgaris
Phvul.003G075900 0.5kb downstream 0.5kb downstream 500 false Chr03: 12000063-12000562 Phaseolus vulgaris
Phvul.003G075900 1.0kb upstream 1.0kb upstream 9822 true Chr03: 12000563-12010384 Phaseolus vulgaris
Phvul.003G075900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 12009385-12010384 Phaseolus vulgaris
Phvul.003G075900 1.0kb downstream 1.0kb downstream 9822 true Chr03: 11999563-12009384 Phaseolus vulgaris
Phvul.003G075900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 11999563-12000562 Phaseolus vulgaris
Phvul.003G075900 2.0kb upstream 2.0kb upstream 10822 true Chr03: 12000563-12011384 Phaseolus vulgaris
Phvul.003G075900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 12009385-12011384 Phaseolus vulgaris
Phvul.003G075900 2.0kb downstream 2.0kb downstream 10822 true Chr03: 11998563-12009384 Phaseolus vulgaris
Phvul.003G075900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 11998563-12000562 Phaseolus vulgaris
Phvul.003G075900 5.0kb upstream 5.0kb upstream 13822 true Chr03: 12000563-12014384 Phaseolus vulgaris
Phvul.003G075900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 12009385-12014384 Phaseolus vulgaris
Phvul.003G075900 5.0kb downstream 5.0kb downstream 13822 true Chr03: 11995563-12009384 Phaseolus vulgaris
Phvul.003G075900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 11995563-12000562 Phaseolus vulgaris
Phvul.003G075900 10.0kb upstream 10.0kb upstream 18822 true Chr03: 12000563-12019384 Phaseolus vulgaris
Phvul.003G075900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 12009385-12019384 Phaseolus vulgaris
Phvul.003G075900 10.0kb downstream 10.0kb downstream 18822 true Chr03: 11990563-12009384 Phaseolus vulgaris
Phvul.003G075900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 11990563-12000562 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299528 5265 Fabidae View MSA
124061693 5270 Rosid View MSA
123752320 5271 Pentapetalae View MSA
122796716 5272 Eudicot View MSA
122043131 5273 Angiosperm View MSA
121344735 5274 Embryophyte View MSA
123424972 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.1188 0.0 39.7897   High
cufflinks 9.85735 0.0 30.9645    
cufflinks 9.02871 0.0 35.3836    
cufflinks 8.77735 0.0 28.9287    
cufflinks 8.68231 0.0 28.5408    
cufflinks 8.12751 0.0 28.4784   Low
cufflinks 10.3884 0.0 32.5092    
cufflinks 9.99849 0.0 38.6628    
cufflinks 9.5724 0.0 38.2757    
cufflinks 11.0311 0.0 42.9857    
cufflinks 8.37077 0.0 27.3183   Low

0 Strain