Gene : Phvul.003G066800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12300:SF51 - HVA22-LIKE PROTEIN C Genomic Order:  681
Name:  ? Phvul.003G066800 Secondary Identifier:  ? PAC:37146422
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G066800 0.5kb upstream 0.5kb upstream 6026 true Chr03: 9708354-9714379 Phaseolus vulgaris
Phvul.003G066800 0.5kb upstream 0.5kb upstream 500 false Chr03: 9708354-9708853 Phaseolus vulgaris
Phvul.003G066800 0.5kb downstream 0.5kb downstream 6026 true Chr03: 9708854-9714879 Phaseolus vulgaris
Phvul.003G066800 0.5kb downstream 0.5kb downstream 500 false Chr03: 9714380-9714879 Phaseolus vulgaris
Phvul.003G066800 1.0kb upstream 1.0kb upstream 6526 true Chr03: 9707854-9714379 Phaseolus vulgaris
Phvul.003G066800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 9707854-9708853 Phaseolus vulgaris
Phvul.003G066800 1.0kb downstream 1.0kb downstream 6526 true Chr03: 9708854-9715379 Phaseolus vulgaris
Phvul.003G066800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 9714380-9715379 Phaseolus vulgaris
Phvul.003G066800 2.0kb upstream 2.0kb upstream 7526 true Chr03: 9706854-9714379 Phaseolus vulgaris
Phvul.003G066800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 9706854-9708853 Phaseolus vulgaris
Phvul.003G066800 2.0kb downstream 2.0kb downstream 7526 true Chr03: 9708854-9716379 Phaseolus vulgaris
Phvul.003G066800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 9714380-9716379 Phaseolus vulgaris
Phvul.003G066800 5.0kb upstream 5.0kb upstream 10526 true Chr03: 9703854-9714379 Phaseolus vulgaris
Phvul.003G066800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 9703854-9708853 Phaseolus vulgaris
Phvul.003G066800 5.0kb downstream 5.0kb downstream 10526 true Chr03: 9708854-9719379 Phaseolus vulgaris
Phvul.003G066800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 9714380-9719379 Phaseolus vulgaris
Phvul.003G066800 10.0kb upstream 10.0kb upstream 15526 true Chr03: 9698854-9714379 Phaseolus vulgaris
Phvul.003G066800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 9698854-9708853 Phaseolus vulgaris
Phvul.003G066800 10.0kb downstream 10.0kb downstream 15526 true Chr03: 9708854-9724379 Phaseolus vulgaris
Phvul.003G066800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 9714380-9724379 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311080 5265 Fabidae View MSA
124069874 5270 Rosid View MSA
123753411 5271 Pentapetalae View MSA
122797924 5272 Eudicot View MSA
122050358 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.22322 0.0 11.1163    
cufflinks 4.7547 0.0 15.7638    
cufflinks 0.211346 0.0 0.921145 Low Low
cufflinks 2.16296 0.0 7.77271    
cufflinks 3.17547 0.0 11.0515    
cufflinks 0.583892 0.0 2.34399   Low
cufflinks 3.28726 0.0 11.4111    
cufflinks 2.45084 0.0 8.73221    
cufflinks 1.70613 0.0 6.3094    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.64828 0.0 12.5426    

0 Strain