Gene : Phvul.003G052100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR30544//PTHR30544:SF3 - 23S RRNA METHYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  534
Name:  ? Phvul.003G052100 Secondary Identifier:  ? PAC:37145522
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G052100 0.5kb upstream 0.5kb upstream 6956 true Chr03: 6670074-6677029 Phaseolus vulgaris
Phvul.003G052100 0.5kb upstream 0.5kb upstream 500 false Chr03: 6670074-6670573 Phaseolus vulgaris
Phvul.003G052100 0.5kb downstream 0.5kb downstream 6956 true Chr03: 6670574-6677529 Phaseolus vulgaris
Phvul.003G052100 0.5kb downstream 0.5kb downstream 500 false Chr03: 6677030-6677529 Phaseolus vulgaris
Phvul.003G052100 1.0kb upstream 1.0kb upstream 7456 true Chr03: 6669574-6677029 Phaseolus vulgaris
Phvul.003G052100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 6669574-6670573 Phaseolus vulgaris
Phvul.003G052100 1.0kb downstream 1.0kb downstream 7456 true Chr03: 6670574-6678029 Phaseolus vulgaris
Phvul.003G052100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 6677030-6678029 Phaseolus vulgaris
Phvul.003G052100 2.0kb upstream 2.0kb upstream 8456 true Chr03: 6668574-6677029 Phaseolus vulgaris
Phvul.003G052100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 6668574-6670573 Phaseolus vulgaris
Phvul.003G052100 2.0kb downstream 2.0kb downstream 8456 true Chr03: 6670574-6679029 Phaseolus vulgaris
Phvul.003G052100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 6677030-6679029 Phaseolus vulgaris
Phvul.003G052100 5.0kb upstream 5.0kb upstream 11456 true Chr03: 6665574-6677029 Phaseolus vulgaris
Phvul.003G052100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 6665574-6670573 Phaseolus vulgaris
Phvul.003G052100 5.0kb downstream 5.0kb downstream 11456 true Chr03: 6670574-6682029 Phaseolus vulgaris
Phvul.003G052100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 6677030-6682029 Phaseolus vulgaris
Phvul.003G052100 10.0kb upstream 10.0kb upstream 16456 true Chr03: 6660574-6677029 Phaseolus vulgaris
Phvul.003G052100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 6660574-6670573 Phaseolus vulgaris
Phvul.003G052100 10.0kb downstream 10.0kb downstream 16456 true Chr03: 6670574-6687029 Phaseolus vulgaris
Phvul.003G052100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 6677030-6687029 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305533 5265 Fabidae View MSA
124065414 5270 Rosid View MSA
123740690 5271 Pentapetalae View MSA
122787851 5272 Eudicot View MSA
122043195 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346291 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.9131 0.0 45.2946    
cufflinks 9.54801 0.0 35.5287    
cufflinks 13.6373 0.0 46.0434   High
cufflinks 11.0052 0.0 34.295    
cufflinks 7.81112 0.0 29.8268    
cufflinks 12.1893 0.0 42.225    
cufflinks 4.15247 0.0 15.7961   Low
cufflinks 3.26948 0.0 13.2724   Low
cufflinks 4.62204 0.0 16.955   Low
cufflinks 11.7515 0.0 40.9667    
cufflinks 5.82529 0.0 23.6939    

0 Strain