Gene : Phvul.003G051300 P. vulgaris v2.1
Defline:  (1 of 2) 6.2.1.20 - Long-chain-fatty-acid--[acyl-carrier-protein] ligase / Acyl-[acyl-carrier-protein] synthetase Genomic Order:  525
Name:  ? Phvul.003G051300 Secondary Identifier:  ? PAC:37147546
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6622 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G051300 0.5kb upstream 0.5kb upstream 22225 true Chr03: 6479605-6501829 Phaseolus vulgaris
Phvul.003G051300 0.5kb upstream 0.5kb upstream 500 false Chr03: 6479605-6480104 Phaseolus vulgaris
Phvul.003G051300 0.5kb downstream 0.5kb downstream 22225 true Chr03: 6480105-6502329 Phaseolus vulgaris
Phvul.003G051300 0.5kb downstream 0.5kb downstream 500 false Chr03: 6501830-6502329 Phaseolus vulgaris
Phvul.003G051300 1.0kb upstream 1.0kb upstream 22725 true Chr03: 6479105-6501829 Phaseolus vulgaris
Phvul.003G051300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 6479105-6480104 Phaseolus vulgaris
Phvul.003G051300 1.0kb downstream 1.0kb downstream 22725 true Chr03: 6480105-6502829 Phaseolus vulgaris
Phvul.003G051300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 6501830-6502829 Phaseolus vulgaris
Phvul.003G051300 2.0kb upstream 2.0kb upstream 23725 true Chr03: 6478105-6501829 Phaseolus vulgaris
Phvul.003G051300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 6478105-6480104 Phaseolus vulgaris
Phvul.003G051300 2.0kb downstream 2.0kb downstream 23725 true Chr03: 6480105-6503829 Phaseolus vulgaris
Phvul.003G051300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 6501830-6503829 Phaseolus vulgaris
Phvul.003G051300 5.0kb upstream 5.0kb upstream 26725 true Chr03: 6475105-6501829 Phaseolus vulgaris
Phvul.003G051300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 6475105-6480104 Phaseolus vulgaris
Phvul.003G051300 5.0kb downstream 5.0kb downstream 26725 true Chr03: 6480105-6506829 Phaseolus vulgaris
Phvul.003G051300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 6501830-6506829 Phaseolus vulgaris
Phvul.003G051300 10.0kb upstream 10.0kb upstream 31725 true Chr03: 6470105-6501829 Phaseolus vulgaris
Phvul.003G051300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 6470105-6480104 Phaseolus vulgaris
Phvul.003G051300 10.0kb downstream 10.0kb downstream 31725 true Chr03: 6480105-6511829 Phaseolus vulgaris
Phvul.003G051300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 6501830-6511829 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310113 5265 Fabidae View MSA
124063017 5270 Rosid View MSA
123740730 5271 Pentapetalae View MSA
122788844 5272 Eudicot View MSA
122041588 5273 Angiosperm View MSA
121344484 5274 Embryophyte View MSA
123427454 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.03019 0.0 3.39836    
cufflinks 1.52676 0.0 4.83257    
cufflinks 2.81096 0.0 8.26896    
cufflinks 6.77789 0.0 18.5142   High
cufflinks 1.8774 0.0 5.86223    
cufflinks 3.87589 0.0 11.0389   High
cufflinks 0.4329 0.0 1.57133 Low  
cufflinks 0.330412 0.0 1.22017 Low Low
cufflinks 0.275358 0.0 1.04157 Low Low
cufflinks 0.259121 0.0 0.98244 Low Low
cufflinks 1.64896 0.0 5.20938    

0 Strain