Gene : Phvul.003G052400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31062:SF25 - XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED Genomic Order:  537
Name:  ? Phvul.003G052400 Secondary Identifier:  ? PAC:37146988
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G052400 0.5kb upstream 0.5kb upstream 2088 true Chr03: 6717161-6719248 Phaseolus vulgaris
Phvul.003G052400 0.5kb upstream 0.5kb upstream 500 false Chr03: 6717161-6717660 Phaseolus vulgaris
Phvul.003G052400 0.5kb downstream 0.5kb downstream 2088 true Chr03: 6717661-6719748 Phaseolus vulgaris
Phvul.003G052400 0.5kb downstream 0.5kb downstream 500 false Chr03: 6719249-6719748 Phaseolus vulgaris
Phvul.003G052400 1.0kb upstream 1.0kb upstream 2588 true Chr03: 6716661-6719248 Phaseolus vulgaris
Phvul.003G052400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 6716661-6717660 Phaseolus vulgaris
Phvul.003G052400 1.0kb downstream 1.0kb downstream 2588 true Chr03: 6717661-6720248 Phaseolus vulgaris
Phvul.003G052400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 6719249-6720248 Phaseolus vulgaris
Phvul.003G052400 2.0kb upstream 2.0kb upstream 3588 true Chr03: 6715661-6719248 Phaseolus vulgaris
Phvul.003G052400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 6715661-6717660 Phaseolus vulgaris
Phvul.003G052400 2.0kb downstream 2.0kb downstream 3588 true Chr03: 6717661-6721248 Phaseolus vulgaris
Phvul.003G052400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 6719249-6721248 Phaseolus vulgaris
Phvul.003G052400 5.0kb upstream 5.0kb upstream 6588 true Chr03: 6712661-6719248 Phaseolus vulgaris
Phvul.003G052400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 6712661-6717660 Phaseolus vulgaris
Phvul.003G052400 5.0kb downstream 5.0kb downstream 6588 true Chr03: 6717661-6724248 Phaseolus vulgaris
Phvul.003G052400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 6719249-6724248 Phaseolus vulgaris
Phvul.003G052400 10.0kb upstream 10.0kb upstream 11588 true Chr03: 6707661-6719248 Phaseolus vulgaris
Phvul.003G052400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 6707661-6717660 Phaseolus vulgaris
Phvul.003G052400 10.0kb downstream 10.0kb downstream 11588 true Chr03: 6717661-6729248 Phaseolus vulgaris
Phvul.003G052400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 6719249-6729248 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301068 5265 Fabidae View MSA
124065411 5270 Rosid View MSA
123745247 5271 Pentapetalae View MSA
122794660 5272 Eudicot View MSA
122049542 5273 Angiosperm View MSA
121347970 5274 Embryophyte View MSA
123380694 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.2202 0.0 66.4172    
cufflinks 4.48522 0.0 13.951    
cufflinks 0.291108 0.0 1.17198 Low Low
cufflinks 127.666 0.0 344.739 High High
cufflinks 4.51761 0.0 14.1491    
cufflinks 0.754439 0.0 2.82384   Low
cufflinks 7.15839 0.0 21.0654    
cufflinks 6.63873 0.0 19.6358    
cufflinks 13.6969 0.0 37.8351    
cufflinks 5.18521 0.0 15.8992    
cufflinks 9.78914 0.0 28.0186    

0 Strain