Gene : Phvul.003G056400 P. vulgaris v2.1
Defline:  (1 of 3) K11644 - paired amphipathic helix protein Sin3a (SIN3A) Genomic Order:  581
Name:  ? Phvul.003G056400 Secondary Identifier:  ? PAC:37147104
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G056400 0.5kb upstream 0.5kb upstream 11705 true Chr03: 7436441-7448145 Phaseolus vulgaris
Phvul.003G056400 0.5kb upstream 0.5kb upstream 500 false Chr03: 7447646-7448145 Phaseolus vulgaris
Phvul.003G056400 0.5kb downstream 0.5kb downstream 11705 true Chr03: 7435941-7447645 Phaseolus vulgaris
Phvul.003G056400 0.5kb downstream 0.5kb downstream 500 false Chr03: 7435941-7436440 Phaseolus vulgaris
Phvul.003G056400 1.0kb upstream 1.0kb upstream 12205 true Chr03: 7436441-7448645 Phaseolus vulgaris
Phvul.003G056400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 7447646-7448645 Phaseolus vulgaris
Phvul.003G056400 1.0kb downstream 1.0kb downstream 12205 true Chr03: 7435441-7447645 Phaseolus vulgaris
Phvul.003G056400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 7435441-7436440 Phaseolus vulgaris
Phvul.003G056400 2.0kb upstream 2.0kb upstream 13205 true Chr03: 7436441-7449645 Phaseolus vulgaris
Phvul.003G056400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 7447646-7449645 Phaseolus vulgaris
Phvul.003G056400 2.0kb downstream 2.0kb downstream 13205 true Chr03: 7434441-7447645 Phaseolus vulgaris
Phvul.003G056400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 7434441-7436440 Phaseolus vulgaris
Phvul.003G056400 5.0kb upstream 5.0kb upstream 16205 true Chr03: 7436441-7452645 Phaseolus vulgaris
Phvul.003G056400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 7447646-7452645 Phaseolus vulgaris
Phvul.003G056400 5.0kb downstream 5.0kb downstream 16205 true Chr03: 7431441-7447645 Phaseolus vulgaris
Phvul.003G056400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 7431441-7436440 Phaseolus vulgaris
Phvul.003G056400 10.0kb upstream 10.0kb upstream 21205 true Chr03: 7436441-7457645 Phaseolus vulgaris
Phvul.003G056400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 7447646-7457645 Phaseolus vulgaris
Phvul.003G056400 10.0kb downstream 10.0kb downstream 21205 true Chr03: 7426441-7447645 Phaseolus vulgaris
Phvul.003G056400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 7426441-7436440 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311868 5265 Fabidae View MSA
124067617 5270 Rosid View MSA
123752813 5271 Pentapetalae View MSA
122791038 5272 Eudicot View MSA
122047034 5273 Angiosperm View MSA
121346152 5274 Embryophyte View MSA
123428507 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.44698 0.0 4.16708   Low
cufflinks 4.19199 0.0 11.0426    
cufflinks 8.49866 0.0 21.9785   High
cufflinks 1.82939 0.0 5.21451   Low
cufflinks 3.93598 0.0 10.4807    
cufflinks 6.8787 0.0 17.7934    
cufflinks 7.33942 0.0 18.9752    
cufflinks 5.84356 0.0 15.145    
cufflinks 6.76646 0.0 17.5142    
cufflinks 7.24313 0.0 18.7318    
cufflinks 3.3009 0.0 8.88589    

0 Strain