Gene : Phvul.003G042400 P. vulgaris v2.1
Defline:  (1 of 46) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  432
Name:  ? Phvul.003G042400 Secondary Identifier:  ? PAC:37147768
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G042400 0.5kb upstream 0.5kb upstream 4805 true Chr03: 4870903-4875707 Phaseolus vulgaris
Phvul.003G042400 0.5kb upstream 0.5kb upstream 500 false Chr03: 4875208-4875707 Phaseolus vulgaris
Phvul.003G042400 0.5kb downstream 0.5kb downstream 4805 true Chr03: 4870403-4875207 Phaseolus vulgaris
Phvul.003G042400 0.5kb downstream 0.5kb downstream 500 false Chr03: 4870403-4870902 Phaseolus vulgaris
Phvul.003G042400 1.0kb upstream 1.0kb upstream 5305 true Chr03: 4870903-4876207 Phaseolus vulgaris
Phvul.003G042400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 4875208-4876207 Phaseolus vulgaris
Phvul.003G042400 1.0kb downstream 1.0kb downstream 5305 true Chr03: 4869903-4875207 Phaseolus vulgaris
Phvul.003G042400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 4869903-4870902 Phaseolus vulgaris
Phvul.003G042400 2.0kb upstream 2.0kb upstream 6305 true Chr03: 4870903-4877207 Phaseolus vulgaris
Phvul.003G042400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 4875208-4877207 Phaseolus vulgaris
Phvul.003G042400 2.0kb downstream 2.0kb downstream 6305 true Chr03: 4868903-4875207 Phaseolus vulgaris
Phvul.003G042400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 4868903-4870902 Phaseolus vulgaris
Phvul.003G042400 5.0kb upstream 5.0kb upstream 9305 true Chr03: 4870903-4880207 Phaseolus vulgaris
Phvul.003G042400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 4875208-4880207 Phaseolus vulgaris
Phvul.003G042400 5.0kb downstream 5.0kb downstream 9305 true Chr03: 4865903-4875207 Phaseolus vulgaris
Phvul.003G042400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 4865903-4870902 Phaseolus vulgaris
Phvul.003G042400 10.0kb upstream 10.0kb upstream 14305 true Chr03: 4870903-4885207 Phaseolus vulgaris
Phvul.003G042400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 4875208-4885207 Phaseolus vulgaris
Phvul.003G042400 10.0kb downstream 10.0kb downstream 14305 true Chr03: 4860903-4875207 Phaseolus vulgaris
Phvul.003G042400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 4860903-4870902 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305086 5265 Fabidae View MSA
124072488 5270 Rosid View MSA
123739877 5271 Pentapetalae View MSA
122787061 5272 Eudicot View MSA
122043654 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351271 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.30641 0.0 15.979   Low
cufflinks 7.09402 0.0 20.7541    
cufflinks 10.6623 0.0 32.3131    
cufflinks 6.60121 0.0 19.1244    
cufflinks 8.60982 0.0 25.2892    
cufflinks 9.74543 0.0 29.2596    
cufflinks 13.0405 0.0 36.8466   High
cufflinks 11.5948 0.0 32.7347    
cufflinks 14.5415 0.0 43.6363   High
cufflinks 7.58267 0.0 25.0719    
cufflinks 7.82324 0.0 22.1853    

0 Strain