Gene : Phvul.003G168100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31245:SF1 - UBIQUITIN SYSTEM COMPONENT CUE PROTEIN Genomic Order:  1705
Name:  ? Phvul.003G168100 Secondary Identifier:  ? PAC:37148156
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G168100 0.5kb upstream 0.5kb upstream 2662 true Chr03: 38889164-38891825 Phaseolus vulgaris
Phvul.003G168100 0.5kb upstream 0.5kb upstream 500 false Chr03: 38889164-38889663 Phaseolus vulgaris
Phvul.003G168100 0.5kb downstream 0.5kb downstream 2662 true Chr03: 38889664-38892325 Phaseolus vulgaris
Phvul.003G168100 0.5kb downstream 0.5kb downstream 500 false Chr03: 38891826-38892325 Phaseolus vulgaris
Phvul.003G168100 1.0kb upstream 1.0kb upstream 3162 true Chr03: 38888664-38891825 Phaseolus vulgaris
Phvul.003G168100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 38888664-38889663 Phaseolus vulgaris
Phvul.003G168100 1.0kb downstream 1.0kb downstream 3162 true Chr03: 38889664-38892825 Phaseolus vulgaris
Phvul.003G168100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 38891826-38892825 Phaseolus vulgaris
Phvul.003G168100 2.0kb upstream 2.0kb upstream 4162 true Chr03: 38887664-38891825 Phaseolus vulgaris
Phvul.003G168100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 38887664-38889663 Phaseolus vulgaris
Phvul.003G168100 2.0kb downstream 2.0kb downstream 4162 true Chr03: 38889664-38893825 Phaseolus vulgaris
Phvul.003G168100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 38891826-38893825 Phaseolus vulgaris
Phvul.003G168100 5.0kb upstream 5.0kb upstream 7162 true Chr03: 38884664-38891825 Phaseolus vulgaris
Phvul.003G168100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 38884664-38889663 Phaseolus vulgaris
Phvul.003G168100 5.0kb downstream 5.0kb downstream 7162 true Chr03: 38889664-38896825 Phaseolus vulgaris
Phvul.003G168100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 38891826-38896825 Phaseolus vulgaris
Phvul.003G168100 10.0kb upstream 10.0kb upstream 12162 true Chr03: 38879664-38891825 Phaseolus vulgaris
Phvul.003G168100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 38879664-38889663 Phaseolus vulgaris
Phvul.003G168100 10.0kb downstream 10.0kb downstream 12162 true Chr03: 38889664-38901825 Phaseolus vulgaris
Phvul.003G168100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 38891826-38901825 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303600 5265 Fabidae View MSA
124074817 5270 Rosid View MSA
123743103 5271 Pentapetalae View MSA
122794733 5272 Eudicot View MSA
122042927 5273 Angiosperm View MSA
121343800 5274 Embryophyte View MSA
123427997 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.3245 0.0 96.5271 High  
cufflinks 31.2447 0.0 80.7874    
cufflinks 24.9406 0.0 64.7491    
cufflinks 42.2605 0.0 109.416 High High
cufflinks 26.1058 0.0 67.754    
cufflinks 18.4415 0.0 48.4995    
cufflinks 14.1358 0.0 37.8199   Low
cufflinks 12.7051 0.0 34.2368   Low
cufflinks 14.0213 0.0 37.5736   Low
cufflinks 35.0403 0.0 90.5811    
cufflinks 32.9558 0.0 85.1953    

0 Strain