Gene : Phvul.003G122300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12103:SF15 - PROTEIN Y71H10B.1, ISOFORM C Genomic Order:  1229
Name:  ? Phvul.003G122300 Secondary Identifier:  ? PAC:37146989
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5381 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5695 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6596 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6606 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6608 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7185 Phaseolus vulgaris pathologic  
Pvulgaris SALVADEHYPOX-PWY Phaseolus vulgaris pathologic  
Pvulgaris URSIN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G122300 0.5kb upstream 0.5kb upstream 7975 true Chr03: 30712144-30720118 Phaseolus vulgaris
Phvul.003G122300 0.5kb upstream 0.5kb upstream 500 false Chr03: 30719619-30720118 Phaseolus vulgaris
Phvul.003G122300 0.5kb downstream 0.5kb downstream 7975 true Chr03: 30711644-30719618 Phaseolus vulgaris
Phvul.003G122300 0.5kb downstream 0.5kb downstream 500 false Chr03: 30711644-30712143 Phaseolus vulgaris
Phvul.003G122300 1.0kb upstream 1.0kb upstream 8475 true Chr03: 30712144-30720618 Phaseolus vulgaris
Phvul.003G122300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 30719619-30720618 Phaseolus vulgaris
Phvul.003G122300 1.0kb downstream 1.0kb downstream 8475 true Chr03: 30711144-30719618 Phaseolus vulgaris
Phvul.003G122300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 30711144-30712143 Phaseolus vulgaris
Phvul.003G122300 2.0kb upstream 2.0kb upstream 9475 true Chr03: 30712144-30721618 Phaseolus vulgaris
Phvul.003G122300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 30719619-30721618 Phaseolus vulgaris
Phvul.003G122300 2.0kb downstream 2.0kb downstream 9475 true Chr03: 30710144-30719618 Phaseolus vulgaris
Phvul.003G122300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 30710144-30712143 Phaseolus vulgaris
Phvul.003G122300 5.0kb upstream 5.0kb upstream 12475 true Chr03: 30712144-30724618 Phaseolus vulgaris
Phvul.003G122300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 30719619-30724618 Phaseolus vulgaris
Phvul.003G122300 5.0kb downstream 5.0kb downstream 12475 true Chr03: 30707144-30719618 Phaseolus vulgaris
Phvul.003G122300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 30707144-30712143 Phaseolus vulgaris
Phvul.003G122300 10.0kb upstream 10.0kb upstream 17475 true Chr03: 30712144-30729618 Phaseolus vulgaris
Phvul.003G122300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 30719619-30729618 Phaseolus vulgaris
Phvul.003G122300 10.0kb downstream 10.0kb downstream 17475 true Chr03: 30702144-30719618 Phaseolus vulgaris
Phvul.003G122300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 30702144-30712143 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301558 5265 Fabidae View MSA
124068211 5270 Rosid View MSA
123737665 5271 Pentapetalae View MSA
122791643 5272 Eudicot View MSA
122047962 5273 Angiosperm View MSA
121348672 5274 Embryophyte View MSA
123428872 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.1034 0.0 35.5982    
cufflinks 21.0387 0.0 61.616    
cufflinks 38.1186 0.0 112.167   High
cufflinks 12.1849 0.0 36.1619    
cufflinks 15.718 0.0 45.4292    
cufflinks 35.8302 0.0 106.176 High High
cufflinks 10.3529 0.0 30.3311    
cufflinks 9.36855 0.0 27.8272   Low
cufflinks 7.62499 0.0 23.7635   Low
cufflinks 24.0716 0.0 70.0637    
cufflinks 17.0722 0.0 48.8089    

0 Strain