Gene : Phvul.003G140800 P. vulgaris v2.1
Defline:  (1 of 158) PF00010 - Helix-loop-helix DNA-binding domain (HLH) Genomic Order:  1413
Name:  ? Phvul.003G140800 Secondary Identifier:  ? PAC:37144337
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G140800 0.5kb upstream 0.5kb upstream 7560 true Chr03: 34058876-34066435 Phaseolus vulgaris
Phvul.003G140800 0.5kb upstream 0.5kb upstream 500 false Chr03: 34065936-34066435 Phaseolus vulgaris
Phvul.003G140800 0.5kb downstream 0.5kb downstream 7560 true Chr03: 34058376-34065935 Phaseolus vulgaris
Phvul.003G140800 0.5kb downstream 0.5kb downstream 500 false Chr03: 34058376-34058875 Phaseolus vulgaris
Phvul.003G140800 1.0kb upstream 1.0kb upstream 8060 true Chr03: 34058876-34066935 Phaseolus vulgaris
Phvul.003G140800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 34065936-34066935 Phaseolus vulgaris
Phvul.003G140800 1.0kb downstream 1.0kb downstream 8060 true Chr03: 34057876-34065935 Phaseolus vulgaris
Phvul.003G140800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 34057876-34058875 Phaseolus vulgaris
Phvul.003G140800 2.0kb upstream 2.0kb upstream 9060 true Chr03: 34058876-34067935 Phaseolus vulgaris
Phvul.003G140800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 34065936-34067935 Phaseolus vulgaris
Phvul.003G140800 2.0kb downstream 2.0kb downstream 9060 true Chr03: 34056876-34065935 Phaseolus vulgaris
Phvul.003G140800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 34056876-34058875 Phaseolus vulgaris
Phvul.003G140800 5.0kb upstream 5.0kb upstream 12060 true Chr03: 34058876-34070935 Phaseolus vulgaris
Phvul.003G140800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 34065936-34070935 Phaseolus vulgaris
Phvul.003G140800 5.0kb downstream 5.0kb downstream 12060 true Chr03: 34053876-34065935 Phaseolus vulgaris
Phvul.003G140800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 34053876-34058875 Phaseolus vulgaris
Phvul.003G140800 10.0kb upstream 10.0kb upstream 17060 true Chr03: 34058876-34075935 Phaseolus vulgaris
Phvul.003G140800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 34065936-34075935 Phaseolus vulgaris
Phvul.003G140800 10.0kb downstream 10.0kb downstream 17060 true Chr03: 34048876-34065935 Phaseolus vulgaris
Phvul.003G140800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 34048876-34058875 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122255355 5265 Fabidae View MSA
124067726 5270 Rosid View MSA
123740187 5271 Pentapetalae View MSA
122797618 5272 Eudicot View MSA
122050016 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.18557 0.0 6.90758    
cufflinks 0.319869 0.0 1.28117 Low Low
cufflinks 1.58344 0.0 8.60988   High
cufflinks 0.71521 0.0 3.36677    
cufflinks 0.750642 0.0 3.52663    
cufflinks 1.56609 0.0 8.80375   High
cufflinks 1.38257 0.0 6.00825    
cufflinks 0.486027 0.0 2.38416    
cufflinks 0.851171 0.0 3.93258    
cufflinks 0.203915 0.0 0.851818 Low Low
cufflinks 0.972126 0.0 4.46019    

0 Strain