Gene : Phvul.003G135600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22942:SF1 - MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG Genomic Order:  1361
Name:  ? Phvul.003G135600 Secondary Identifier:  ? PAC:37146110
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G135600 0.5kb upstream 0.5kb upstream 10227 true Chr03: 33315029-33325255 Phaseolus vulgaris
Phvul.003G135600 0.5kb upstream 0.5kb upstream 500 false Chr03: 33315029-33315528 Phaseolus vulgaris
Phvul.003G135600 0.5kb downstream 0.5kb downstream 10227 true Chr03: 33315529-33325755 Phaseolus vulgaris
Phvul.003G135600 0.5kb downstream 0.5kb downstream 500 false Chr03: 33325256-33325755 Phaseolus vulgaris
Phvul.003G135600 1.0kb upstream 1.0kb upstream 10727 true Chr03: 33314529-33325255 Phaseolus vulgaris
Phvul.003G135600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 33314529-33315528 Phaseolus vulgaris
Phvul.003G135600 1.0kb downstream 1.0kb downstream 10727 true Chr03: 33315529-33326255 Phaseolus vulgaris
Phvul.003G135600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 33325256-33326255 Phaseolus vulgaris
Phvul.003G135600 2.0kb upstream 2.0kb upstream 11727 true Chr03: 33313529-33325255 Phaseolus vulgaris
Phvul.003G135600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 33313529-33315528 Phaseolus vulgaris
Phvul.003G135600 2.0kb downstream 2.0kb downstream 11727 true Chr03: 33315529-33327255 Phaseolus vulgaris
Phvul.003G135600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 33325256-33327255 Phaseolus vulgaris
Phvul.003G135600 5.0kb upstream 5.0kb upstream 14727 true Chr03: 33310529-33325255 Phaseolus vulgaris
Phvul.003G135600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 33310529-33315528 Phaseolus vulgaris
Phvul.003G135600 5.0kb downstream 5.0kb downstream 14727 true Chr03: 33315529-33330255 Phaseolus vulgaris
Phvul.003G135600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 33325256-33330255 Phaseolus vulgaris
Phvul.003G135600 10.0kb upstream 10.0kb upstream 19727 true Chr03: 33305529-33325255 Phaseolus vulgaris
Phvul.003G135600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 33305529-33315528 Phaseolus vulgaris
Phvul.003G135600 10.0kb downstream 10.0kb downstream 19727 true Chr03: 33315529-33335255 Phaseolus vulgaris
Phvul.003G135600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 33325256-33335255 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299500 5265 Fabidae View MSA
124060910 5270 Rosid View MSA
123743404 5271 Pentapetalae View MSA
122790818 5272 Eudicot View MSA
122045748 5273 Angiosperm View MSA
121351318 5274 Embryophyte View MSA
123382118 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.65419 0.0 12.8124   High
cufflinks 1.46897 0.0 5.71397    
cufflinks 2.18968 0.0 9.30307    
cufflinks 1.60958 0.0 9.91565    
cufflinks 1.29671 0.0 5.36066    
cufflinks 1.17435 0.0 6.23401    
cufflinks 1.22168 0.0 6.08075    
cufflinks 0.999338 0.0 5.15155    
cufflinks 0.639295 0.0 2.85181   Low
cufflinks 3.2178 0.0 18.346   High
cufflinks 1.58332 0.0 9.18134    

0 Strain