Gene : Phvul.003G129300 P. vulgaris v2.1
Defline:  (1 of 32) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  1300
Name:  ? Phvul.003G129300 Secondary Identifier:  ? PAC:37144341
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G129300 0.5kb upstream 0.5kb upstream 8767 true Chr03: 32322094-32330860 Phaseolus vulgaris
Phvul.003G129300 0.5kb upstream 0.5kb upstream 500 false Chr03: 32330361-32330860 Phaseolus vulgaris
Phvul.003G129300 0.5kb downstream 0.5kb downstream 8767 true Chr03: 32321594-32330360 Phaseolus vulgaris
Phvul.003G129300 0.5kb downstream 0.5kb downstream 500 false Chr03: 32321594-32322093 Phaseolus vulgaris
Phvul.003G129300 1.0kb upstream 1.0kb upstream 9267 true Chr03: 32322094-32331360 Phaseolus vulgaris
Phvul.003G129300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 32330361-32331360 Phaseolus vulgaris
Phvul.003G129300 1.0kb downstream 1.0kb downstream 9267 true Chr03: 32321094-32330360 Phaseolus vulgaris
Phvul.003G129300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 32321094-32322093 Phaseolus vulgaris
Phvul.003G129300 2.0kb upstream 2.0kb upstream 10267 true Chr03: 32322094-32332360 Phaseolus vulgaris
Phvul.003G129300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 32330361-32332360 Phaseolus vulgaris
Phvul.003G129300 2.0kb downstream 2.0kb downstream 10267 true Chr03: 32320094-32330360 Phaseolus vulgaris
Phvul.003G129300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 32320094-32322093 Phaseolus vulgaris
Phvul.003G129300 5.0kb upstream 5.0kb upstream 13267 true Chr03: 32322094-32335360 Phaseolus vulgaris
Phvul.003G129300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 32330361-32335360 Phaseolus vulgaris
Phvul.003G129300 5.0kb downstream 5.0kb downstream 13267 true Chr03: 32317094-32330360 Phaseolus vulgaris
Phvul.003G129300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 32317094-32322093 Phaseolus vulgaris
Phvul.003G129300 10.0kb upstream 10.0kb upstream 18267 true Chr03: 32322094-32340360 Phaseolus vulgaris
Phvul.003G129300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 32330361-32340360 Phaseolus vulgaris
Phvul.003G129300 10.0kb downstream 10.0kb downstream 18267 true Chr03: 32312094-32330360 Phaseolus vulgaris
Phvul.003G129300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 32312094-32322093 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
122302558 5265 Fabidae View MSA
124066643 5270 Rosid View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.3539 0.0 42.518    
cufflinks 23.164 0.0 59.8751    
cufflinks 16.7722 0.0 43.5856    
cufflinks 22.3486 0.0 57.7686    
cufflinks 37.3373 0.0 97.4167 High High
cufflinks 19.0001 0.0 49.2065    
cufflinks 16.803 0.0 43.5938    
cufflinks 9.7597 0.0 26.0767   Low
cufflinks 19.8454 0.0 51.3463    
cufflinks 24.144 0.0 62.411    
cufflinks 47.4697 0.0 125.612 High High

0 Strain