Gene : Phvul.003G119200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23068//PTHR23068:SF11 - DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1198
Name:  ? Phvul.003G119200 Secondary Identifier:  ? PAC:37146566
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G119200 0.5kb upstream 0.5kb upstream 13087 true Chr03: 30316366-30329452 Phaseolus vulgaris
Phvul.003G119200 0.5kb upstream 0.5kb upstream 500 false Chr03: 30328953-30329452 Phaseolus vulgaris
Phvul.003G119200 0.5kb downstream 0.5kb downstream 13087 true Chr03: 30315866-30328952 Phaseolus vulgaris
Phvul.003G119200 0.5kb downstream 0.5kb downstream 500 false Chr03: 30315866-30316365 Phaseolus vulgaris
Phvul.003G119200 1.0kb upstream 1.0kb upstream 13587 true Chr03: 30316366-30329952 Phaseolus vulgaris
Phvul.003G119200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 30328953-30329952 Phaseolus vulgaris
Phvul.003G119200 1.0kb downstream 1.0kb downstream 13587 true Chr03: 30315366-30328952 Phaseolus vulgaris
Phvul.003G119200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 30315366-30316365 Phaseolus vulgaris
Phvul.003G119200 2.0kb upstream 2.0kb upstream 14587 true Chr03: 30316366-30330952 Phaseolus vulgaris
Phvul.003G119200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 30328953-30330952 Phaseolus vulgaris
Phvul.003G119200 2.0kb downstream 2.0kb downstream 14587 true Chr03: 30314366-30328952 Phaseolus vulgaris
Phvul.003G119200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 30314366-30316365 Phaseolus vulgaris
Phvul.003G119200 5.0kb upstream 5.0kb upstream 17587 true Chr03: 30316366-30333952 Phaseolus vulgaris
Phvul.003G119200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 30328953-30333952 Phaseolus vulgaris
Phvul.003G119200 5.0kb downstream 5.0kb downstream 17587 true Chr03: 30311366-30328952 Phaseolus vulgaris
Phvul.003G119200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 30311366-30316365 Phaseolus vulgaris
Phvul.003G119200 10.0kb upstream 10.0kb upstream 22587 true Chr03: 30316366-30338952 Phaseolus vulgaris
Phvul.003G119200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 30328953-30338952 Phaseolus vulgaris
Phvul.003G119200 10.0kb downstream 10.0kb downstream 22587 true Chr03: 30306366-30328952 Phaseolus vulgaris
Phvul.003G119200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 30306366-30316365 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304849 5265 Fabidae View MSA
124066884 5270 Rosid View MSA
123739152 5271 Pentapetalae View MSA
122785997 5272 Eudicot View MSA
122049231 5273 Angiosperm View MSA
121350699 5274 Embryophyte View MSA
123381851 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.37056 0.0 10.7537   Low
cufflinks 4.84599 0.0 20.1403    
cufflinks 4.46571 0.0 19.4366    
cufflinks 2.21411 0.0 12.3943   Low
cufflinks 2.52187 0.0 12.9303    
cufflinks 5.7757 0.0 21.4228   High
cufflinks 3.87849 0.0 19.4533    
cufflinks 6.44244 0.0 29.7873   High
cufflinks 2.17826 0.0 11.8316   Low
cufflinks 3.63231 0.0 17.302    
cufflinks 3.10527 0.0 16.2247    

0 Strain