Gene : Phvul.003G111100 P. vulgaris v2.1
Defline:  (1 of 2) K03681 - exosome complex component RRP40 (RRP40, EXOSC3) Genomic Order:  1121
Name:  ? Phvul.003G111100 Secondary Identifier:  ? PAC:37146055
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G111100 0.5kb upstream 0.5kb upstream 7976 true Chr03: 28472223-28480198 Phaseolus vulgaris
Phvul.003G111100 0.5kb upstream 0.5kb upstream 500 false Chr03: 28472223-28472722 Phaseolus vulgaris
Phvul.003G111100 0.5kb downstream 0.5kb downstream 7976 true Chr03: 28472723-28480698 Phaseolus vulgaris
Phvul.003G111100 0.5kb downstream 0.5kb downstream 500 false Chr03: 28480199-28480698 Phaseolus vulgaris
Phvul.003G111100 1.0kb upstream 1.0kb upstream 8476 true Chr03: 28471723-28480198 Phaseolus vulgaris
Phvul.003G111100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 28471723-28472722 Phaseolus vulgaris
Phvul.003G111100 1.0kb downstream 1.0kb downstream 8476 true Chr03: 28472723-28481198 Phaseolus vulgaris
Phvul.003G111100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 28480199-28481198 Phaseolus vulgaris
Phvul.003G111100 2.0kb upstream 2.0kb upstream 9476 true Chr03: 28470723-28480198 Phaseolus vulgaris
Phvul.003G111100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 28470723-28472722 Phaseolus vulgaris
Phvul.003G111100 2.0kb downstream 2.0kb downstream 9476 true Chr03: 28472723-28482198 Phaseolus vulgaris
Phvul.003G111100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 28480199-28482198 Phaseolus vulgaris
Phvul.003G111100 5.0kb upstream 5.0kb upstream 12476 true Chr03: 28467723-28480198 Phaseolus vulgaris
Phvul.003G111100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 28467723-28472722 Phaseolus vulgaris
Phvul.003G111100 5.0kb downstream 5.0kb downstream 12476 true Chr03: 28472723-28485198 Phaseolus vulgaris
Phvul.003G111100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 28480199-28485198 Phaseolus vulgaris
Phvul.003G111100 10.0kb upstream 10.0kb upstream 17476 true Chr03: 28462723-28480198 Phaseolus vulgaris
Phvul.003G111100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 28462723-28472722 Phaseolus vulgaris
Phvul.003G111100 10.0kb downstream 10.0kb downstream 17476 true Chr03: 28472723-28490198 Phaseolus vulgaris
Phvul.003G111100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 28480199-28490198 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301974 5265 Fabidae View MSA
124061201 5270 Rosid View MSA
123736741 5271 Pentapetalae View MSA
122789639 5272 Eudicot View MSA
122045630 5273 Angiosperm View MSA
121344862 5274 Embryophyte View MSA
123428759 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.21143 0.0 15.3789    
cufflinks 6.68181 0.0 19.2372   High
cufflinks 3.27798 0.0 10.1956   Low
cufflinks 5.4753 0.0 16.2508    
cufflinks 4.05851 0.0 12.4889    
cufflinks 3.38052 0.0 10.5085   Low
cufflinks 3.99259 0.0 12.2353    
cufflinks 4.21691 0.0 12.7306    
cufflinks 3.38298 0.0 10.5709   Low
cufflinks 5.5012 0.0 16.1665    
cufflinks 4.7703 0.0 14.3677    

0 Strain