Gene : Phvul.003G114100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Genomic Order:  1147
Name:  ? Phvul.003G114100 Secondary Identifier:  ? PAC:37144402
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G114100 0.5kb upstream 0.5kb upstream 4977 true Chr03: 29097271-29102247 Phaseolus vulgaris
Phvul.003G114100 0.5kb upstream 0.5kb upstream 500 false Chr03: 29101748-29102247 Phaseolus vulgaris
Phvul.003G114100 0.5kb downstream 0.5kb downstream 4977 true Chr03: 29096771-29101747 Phaseolus vulgaris
Phvul.003G114100 0.5kb downstream 0.5kb downstream 500 false Chr03: 29096771-29097270 Phaseolus vulgaris
Phvul.003G114100 1.0kb upstream 1.0kb upstream 5477 true Chr03: 29097271-29102747 Phaseolus vulgaris
Phvul.003G114100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 29101748-29102747 Phaseolus vulgaris
Phvul.003G114100 1.0kb downstream 1.0kb downstream 5477 true Chr03: 29096271-29101747 Phaseolus vulgaris
Phvul.003G114100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 29096271-29097270 Phaseolus vulgaris
Phvul.003G114100 2.0kb upstream 2.0kb upstream 6477 true Chr03: 29097271-29103747 Phaseolus vulgaris
Phvul.003G114100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 29101748-29103747 Phaseolus vulgaris
Phvul.003G114100 2.0kb downstream 2.0kb downstream 6477 true Chr03: 29095271-29101747 Phaseolus vulgaris
Phvul.003G114100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 29095271-29097270 Phaseolus vulgaris
Phvul.003G114100 5.0kb upstream 5.0kb upstream 9477 true Chr03: 29097271-29106747 Phaseolus vulgaris
Phvul.003G114100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 29101748-29106747 Phaseolus vulgaris
Phvul.003G114100 5.0kb downstream 5.0kb downstream 9477 true Chr03: 29092271-29101747 Phaseolus vulgaris
Phvul.003G114100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 29092271-29097270 Phaseolus vulgaris
Phvul.003G114100 10.0kb upstream 10.0kb upstream 14477 true Chr03: 29097271-29111747 Phaseolus vulgaris
Phvul.003G114100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 29101748-29111747 Phaseolus vulgaris
Phvul.003G114100 10.0kb downstream 10.0kb downstream 14477 true Chr03: 29087271-29101747 Phaseolus vulgaris
Phvul.003G114100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 29087271-29097270 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300236 5265 Fabidae View MSA
124068395 5270 Rosid View MSA
123738707 5271 Pentapetalae View MSA
122785733 5272 Eudicot View MSA
122045803 5273 Angiosperm View MSA
121347317 5274 Embryophyte View MSA
123426639 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.11444 0.0 23.9594    
cufflinks 10.1534 0.0 26.5492    
cufflinks 41.2206 0.0 110.405 High High
cufflinks 4.36456 0.0 12.2331    
cufflinks 10.4244 0.0 27.351    
cufflinks 21.4241 0.0 55.5301    
cufflinks 0.249841 0.0 0.937658 Low Low
cufflinks 0.154982 0.0 0.603779 Low Low
cufflinks 0.197862 0.0 0.75648 Low Low
cufflinks 6.96251 0.0 18.6797    
cufflinks 10.3991 0.0 27.215    

0 Strain