Gene : Phvul.003G170100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12526//PTHR12526:SF334 - GLYCOSYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  1724
Name:  ? Phvul.003G170100 Secondary Identifier:  ? PAC:37147754
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7238 Phaseolus vulgaris pathologic  
Pvulgaris SUCSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G170100 0.5kb upstream 0.5kb upstream 7954 true Chr03: 39178482-39186435 Phaseolus vulgaris
Phvul.003G170100 0.5kb upstream 0.5kb upstream 500 false Chr03: 39185936-39186435 Phaseolus vulgaris
Phvul.003G170100 0.5kb downstream 0.5kb downstream 7954 true Chr03: 39177982-39185935 Phaseolus vulgaris
Phvul.003G170100 0.5kb downstream 0.5kb downstream 500 false Chr03: 39177982-39178481 Phaseolus vulgaris
Phvul.003G170100 1.0kb upstream 1.0kb upstream 8454 true Chr03: 39178482-39186935 Phaseolus vulgaris
Phvul.003G170100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39185936-39186935 Phaseolus vulgaris
Phvul.003G170100 1.0kb downstream 1.0kb downstream 8454 true Chr03: 39177482-39185935 Phaseolus vulgaris
Phvul.003G170100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39177482-39178481 Phaseolus vulgaris
Phvul.003G170100 2.0kb upstream 2.0kb upstream 9454 true Chr03: 39178482-39187935 Phaseolus vulgaris
Phvul.003G170100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39185936-39187935 Phaseolus vulgaris
Phvul.003G170100 2.0kb downstream 2.0kb downstream 9454 true Chr03: 39176482-39185935 Phaseolus vulgaris
Phvul.003G170100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39176482-39178481 Phaseolus vulgaris
Phvul.003G170100 5.0kb upstream 5.0kb upstream 12454 true Chr03: 39178482-39190935 Phaseolus vulgaris
Phvul.003G170100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39185936-39190935 Phaseolus vulgaris
Phvul.003G170100 5.0kb downstream 5.0kb downstream 12454 true Chr03: 39173482-39185935 Phaseolus vulgaris
Phvul.003G170100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39173482-39178481 Phaseolus vulgaris
Phvul.003G170100 10.0kb upstream 10.0kb upstream 17454 true Chr03: 39178482-39195935 Phaseolus vulgaris
Phvul.003G170100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39185936-39195935 Phaseolus vulgaris
Phvul.003G170100 10.0kb downstream 10.0kb downstream 17454 true Chr03: 39168482-39185935 Phaseolus vulgaris
Phvul.003G170100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39168482-39178481 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306114 5265 Fabidae View MSA
124062800 5270 Rosid View MSA
123741512 5271 Pentapetalae View MSA
122790617 5272 Eudicot View MSA
122047849 5273 Angiosperm View MSA
121310805 5274 Embryophyte View MSA
123348202 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.8903 0.0 179.803 High High
cufflinks 27.9325 0.0 76.4527    
cufflinks 24.9185 0.0 67.4536    
cufflinks 34.3344 0.0 95.3582    
cufflinks 40.1995 0.0 113.801 High  
cufflinks 16.6425 0.0 43.7333   Low
cufflinks 27.9503 0.0 76.7514 High  
cufflinks 23.6512 0.0 63.9871    
cufflinks 23.9185 0.0 64.6093    
cufflinks 116.402 0.0 394.113 High High
cufflinks 31.4377 0.0 86.9306    

0 Strain