Gene : Phvul.003G231100 P. vulgaris v2.1

Defline:  (1 of 3) PTHR23042:SF61 - TRANSCRIPTION FACTOR BHLH18-RELATED Genomic Order:  2345
Name:  ? Phvul.003G231100 Secondary Identifier:  ? PAC:37146921

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G231100 0.5kb upstream 0.5kb upstream 2501 true Chr03: 46345765-46348265 Phaseolus vulgaris
Phvul.003G231100 0.5kb upstream 0.5kb upstream 500 false Chr03: 46345765-46346264 Phaseolus vulgaris
Phvul.003G231100 0.5kb downstream 0.5kb downstream 2501 true Chr03: 46346265-46348765 Phaseolus vulgaris
Phvul.003G231100 0.5kb downstream 0.5kb downstream 500 false Chr03: 46348266-46348765 Phaseolus vulgaris
Phvul.003G231100 1.0kb upstream 1.0kb upstream 3001 true Chr03: 46345265-46348265 Phaseolus vulgaris
Phvul.003G231100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 46345265-46346264 Phaseolus vulgaris
Phvul.003G231100 1.0kb downstream 1.0kb downstream 3001 true Chr03: 46346265-46349265 Phaseolus vulgaris
Phvul.003G231100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 46348266-46349265 Phaseolus vulgaris
Phvul.003G231100 2.0kb upstream 2.0kb upstream 4001 true Chr03: 46344265-46348265 Phaseolus vulgaris
Phvul.003G231100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 46344265-46346264 Phaseolus vulgaris
Phvul.003G231100 2.0kb downstream 2.0kb downstream 4001 true Chr03: 46346265-46350265 Phaseolus vulgaris
Phvul.003G231100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 46348266-46350265 Phaseolus vulgaris
Phvul.003G231100 5.0kb upstream 5.0kb upstream 7001 true Chr03: 46341265-46348265 Phaseolus vulgaris
Phvul.003G231100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 46341265-46346264 Phaseolus vulgaris
Phvul.003G231100 5.0kb downstream 5.0kb downstream 7001 true Chr03: 46346265-46353265 Phaseolus vulgaris
Phvul.003G231100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 46348266-46353265 Phaseolus vulgaris
Phvul.003G231100 10.0kb upstream 10.0kb upstream 12001 true Chr03: 46336265-46348265 Phaseolus vulgaris
Phvul.003G231100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 46336265-46346264 Phaseolus vulgaris
Phvul.003G231100 10.0kb downstream 10.0kb downstream 12001 true Chr03: 46346265-46358265 Phaseolus vulgaris
Phvul.003G231100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 46348266-46358265 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296259 5265 Fabidae View MSA
124070459 5270 Rosid View MSA
123749435 5271 Pentapetalae View MSA
122795103 5272 Eudicot View MSA
122042005 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.465365 0.0 1.72224    
cufflinks 1.83202 0.0 5.86748    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.392352 0.0 1.47852 Low  
cufflinks 0.201504 0.0 0.802927 Low Low
cufflinks 0.186694 0.0 0.741692 Low Low
cufflinks 1.73484 0.0 5.56083    
cufflinks 1.48422 0.0 4.83443    
cufflinks 3.93694 0.0 11.4946   High
cufflinks 0.847809 0.0 2.97258    
cufflinks 0.436311 0.0 1.62739 Low  

0 Strain