Gene : Phvul.003G172700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR30508:SF1 - UPF0051 PROTEIN ABCI8, CHLOROPLASTIC-RELATED Genomic Order:  1751
Name:  ? Phvul.003G172700 Secondary Identifier:  ? PAC:37148109
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G172700 0.5kb upstream 0.5kb upstream 3180 true Chr03: 39473633-39476812 Phaseolus vulgaris
Phvul.003G172700 0.5kb upstream 0.5kb upstream 500 false Chr03: 39476313-39476812 Phaseolus vulgaris
Phvul.003G172700 0.5kb downstream 0.5kb downstream 3180 true Chr03: 39473133-39476312 Phaseolus vulgaris
Phvul.003G172700 0.5kb downstream 0.5kb downstream 500 false Chr03: 39473133-39473632 Phaseolus vulgaris
Phvul.003G172700 1.0kb upstream 1.0kb upstream 3680 true Chr03: 39473633-39477312 Phaseolus vulgaris
Phvul.003G172700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39476313-39477312 Phaseolus vulgaris
Phvul.003G172700 1.0kb downstream 1.0kb downstream 3680 true Chr03: 39472633-39476312 Phaseolus vulgaris
Phvul.003G172700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39472633-39473632 Phaseolus vulgaris
Phvul.003G172700 2.0kb upstream 2.0kb upstream 4680 true Chr03: 39473633-39478312 Phaseolus vulgaris
Phvul.003G172700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39476313-39478312 Phaseolus vulgaris
Phvul.003G172700 2.0kb downstream 2.0kb downstream 4680 true Chr03: 39471633-39476312 Phaseolus vulgaris
Phvul.003G172700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39471633-39473632 Phaseolus vulgaris
Phvul.003G172700 5.0kb upstream 5.0kb upstream 7680 true Chr03: 39473633-39481312 Phaseolus vulgaris
Phvul.003G172700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39476313-39481312 Phaseolus vulgaris
Phvul.003G172700 5.0kb downstream 5.0kb downstream 7680 true Chr03: 39468633-39476312 Phaseolus vulgaris
Phvul.003G172700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39468633-39473632 Phaseolus vulgaris
Phvul.003G172700 10.0kb upstream 10.0kb upstream 12680 true Chr03: 39473633-39486312 Phaseolus vulgaris
Phvul.003G172700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39476313-39486312 Phaseolus vulgaris
Phvul.003G172700 10.0kb downstream 10.0kb downstream 12680 true Chr03: 39463633-39476312 Phaseolus vulgaris
Phvul.003G172700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39463633-39473632 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305326 5265 Fabidae View MSA
124060841 5270 Rosid View MSA
123742833 5271 Pentapetalae View MSA
122792679 5272 Eudicot View MSA
122051474 5273 Angiosperm View MSA
121345946 5274 Embryophyte View MSA
123424242 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 56.9907 0.0 157.581 High High
cufflinks 32.5917 0.0 85.7921    
cufflinks 98.6801 0.0 287.932 High High
cufflinks 29.3748 0.0 77.1434    
cufflinks 30.2852 0.0 79.4637    
cufflinks 48.7489 0.0 132.266 High  
cufflinks 23.06 0.0 59.9642    
cufflinks 20.7859 0.0 53.8199   Low
cufflinks 24.1288 0.0 62.8128    
cufflinks 37.8816 0.0 100.766 High  
cufflinks 37.9161 0.0 101.132 High  

0 Strain