Gene : Phvul.003G213900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31032:SF1 - PGR5-LIKE PROTEIN 1A, CHLOROPLASTIC-RELATED Genomic Order:  2161
Name:  ? Phvul.003G213900 Secondary Identifier:  ? PAC:37145030
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G213900 0.5kb upstream 0.5kb upstream 4410 true Chr03: 44064896-44069305 Phaseolus vulgaris
Phvul.003G213900 0.5kb upstream 0.5kb upstream 500 false Chr03: 44068806-44069305 Phaseolus vulgaris
Phvul.003G213900 0.5kb downstream 0.5kb downstream 4410 true Chr03: 44064396-44068805 Phaseolus vulgaris
Phvul.003G213900 0.5kb downstream 0.5kb downstream 500 false Chr03: 44064396-44064895 Phaseolus vulgaris
Phvul.003G213900 1.0kb upstream 1.0kb upstream 4910 true Chr03: 44064896-44069805 Phaseolus vulgaris
Phvul.003G213900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 44068806-44069805 Phaseolus vulgaris
Phvul.003G213900 1.0kb downstream 1.0kb downstream 4910 true Chr03: 44063896-44068805 Phaseolus vulgaris
Phvul.003G213900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 44063896-44064895 Phaseolus vulgaris
Phvul.003G213900 2.0kb upstream 2.0kb upstream 5910 true Chr03: 44064896-44070805 Phaseolus vulgaris
Phvul.003G213900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 44068806-44070805 Phaseolus vulgaris
Phvul.003G213900 2.0kb downstream 2.0kb downstream 5910 true Chr03: 44062896-44068805 Phaseolus vulgaris
Phvul.003G213900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 44062896-44064895 Phaseolus vulgaris
Phvul.003G213900 5.0kb upstream 5.0kb upstream 8910 true Chr03: 44064896-44073805 Phaseolus vulgaris
Phvul.003G213900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 44068806-44073805 Phaseolus vulgaris
Phvul.003G213900 5.0kb downstream 5.0kb downstream 8910 true Chr03: 44059896-44068805 Phaseolus vulgaris
Phvul.003G213900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 44059896-44064895 Phaseolus vulgaris
Phvul.003G213900 10.0kb upstream 10.0kb upstream 13910 true Chr03: 44064896-44078805 Phaseolus vulgaris
Phvul.003G213900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 44068806-44078805 Phaseolus vulgaris
Phvul.003G213900 10.0kb downstream 10.0kb downstream 13910 true Chr03: 44054896-44068805 Phaseolus vulgaris
Phvul.003G213900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 44054896-44064895 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312093 5265 Fabidae View MSA
124060834 5270 Rosid View MSA
123741079 5271 Pentapetalae View MSA
122790680 5272 Eudicot View MSA
122043689 5273 Angiosperm View MSA
121345999 5274 Embryophyte View MSA
123428179 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 68.7648 0.0 181.637 High  
cufflinks 41.9102 0.0 108.511 High  
cufflinks 249.57 0.0 767.573 High High
cufflinks 27.9028 0.0 72.3455    
cufflinks 34.5048 0.0 89.2025 High  
cufflinks 97.6812 0.0 265.693 High  
cufflinks 0.144037 0.0 0.601286 Low Low
cufflinks 0.506639 0.0 1.90501   Low
cufflinks 0.0945459 0.0 0.410607 Low Low
cufflinks 68.9118 0.0 182.047 High  
cufflinks 28.6439 0.0 74.238    

0 Strain