Gene : Phvul.003G203600 P. vulgaris v2.1
Defline:  (1 of 48) PF03195 - Protein of unknown function DUF260 (DUF260) Genomic Order:  2057
Name:  ? Phvul.003G203600 Secondary Identifier:  ? PAC:37146158
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G203600 0.5kb upstream 0.5kb upstream 2742 true Chr03: 42940945-42943686 Phaseolus vulgaris
Phvul.003G203600 0.5kb upstream 0.5kb upstream 500 false Chr03: 42943187-42943686 Phaseolus vulgaris
Phvul.003G203600 0.5kb downstream 0.5kb downstream 2742 true Chr03: 42940445-42943186 Phaseolus vulgaris
Phvul.003G203600 0.5kb downstream 0.5kb downstream 500 false Chr03: 42940445-42940944 Phaseolus vulgaris
Phvul.003G203600 1.0kb upstream 1.0kb upstream 3242 true Chr03: 42940945-42944186 Phaseolus vulgaris
Phvul.003G203600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42943187-42944186 Phaseolus vulgaris
Phvul.003G203600 1.0kb downstream 1.0kb downstream 3242 true Chr03: 42939945-42943186 Phaseolus vulgaris
Phvul.003G203600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42939945-42940944 Phaseolus vulgaris
Phvul.003G203600 2.0kb upstream 2.0kb upstream 4242 true Chr03: 42940945-42945186 Phaseolus vulgaris
Phvul.003G203600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42943187-42945186 Phaseolus vulgaris
Phvul.003G203600 2.0kb downstream 2.0kb downstream 4242 true Chr03: 42938945-42943186 Phaseolus vulgaris
Phvul.003G203600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42938945-42940944 Phaseolus vulgaris
Phvul.003G203600 5.0kb upstream 5.0kb upstream 7242 true Chr03: 42940945-42948186 Phaseolus vulgaris
Phvul.003G203600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42943187-42948186 Phaseolus vulgaris
Phvul.003G203600 5.0kb downstream 5.0kb downstream 7242 true Chr03: 42935945-42943186 Phaseolus vulgaris
Phvul.003G203600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42935945-42940944 Phaseolus vulgaris
Phvul.003G203600 10.0kb upstream 10.0kb upstream 12242 true Chr03: 42940945-42953186 Phaseolus vulgaris
Phvul.003G203600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42943187-42953186 Phaseolus vulgaris
Phvul.003G203600 10.0kb downstream 10.0kb downstream 12242 true Chr03: 42930945-42943186 Phaseolus vulgaris
Phvul.003G203600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42930945-42940944 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313203 5265 Fabidae View MSA
124070294 5270 Rosid View MSA
123752210 5271 Pentapetalae View MSA
122796223 5272 Eudicot View MSA
122048133 5273 Angiosperm View MSA
121350574 5274 Embryophyte View MSA
123381803 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.525248 0.0 2.38528    
cufflinks 0.139368 0.0 0.593974 Low Low
cufflinks 0.0511051 0.0 0.255776 Low Low
cufflinks 0.820355 0.0 5.14856    
cufflinks 1.75762 0.0 9.06472   High
cufflinks 0.557685 0.0 2.62516    
cufflinks 0.543451 0.0 3.76113 Low  
cufflinks 0.494989 0.0 2.43398    
cufflinks 0.430816 0.0 3.0608 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.57314 0.0 8.32556   High

0 Strain