Gene : Phvul.003G203800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10625:SF109 - HISTONE DEACETYLASE 2 Genomic Order:  2059
Name:  ? Phvul.003G203800 Secondary Identifier:  ? PAC:37146443
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G203800 0.5kb upstream 0.5kb upstream 3690 true Chr03: 42979351-42983040 Phaseolus vulgaris
Phvul.003G203800 0.5kb upstream 0.5kb upstream 500 false Chr03: 42982541-42983040 Phaseolus vulgaris
Phvul.003G203800 0.5kb downstream 0.5kb downstream 3690 true Chr03: 42978851-42982540 Phaseolus vulgaris
Phvul.003G203800 0.5kb downstream 0.5kb downstream 500 false Chr03: 42978851-42979350 Phaseolus vulgaris
Phvul.003G203800 1.0kb upstream 1.0kb upstream 4190 true Chr03: 42979351-42983540 Phaseolus vulgaris
Phvul.003G203800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42982541-42983540 Phaseolus vulgaris
Phvul.003G203800 1.0kb downstream 1.0kb downstream 4190 true Chr03: 42978351-42982540 Phaseolus vulgaris
Phvul.003G203800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42978351-42979350 Phaseolus vulgaris
Phvul.003G203800 2.0kb upstream 2.0kb upstream 5190 true Chr03: 42979351-42984540 Phaseolus vulgaris
Phvul.003G203800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42982541-42984540 Phaseolus vulgaris
Phvul.003G203800 2.0kb downstream 2.0kb downstream 5190 true Chr03: 42977351-42982540 Phaseolus vulgaris
Phvul.003G203800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42977351-42979350 Phaseolus vulgaris
Phvul.003G203800 5.0kb upstream 5.0kb upstream 8190 true Chr03: 42979351-42987540 Phaseolus vulgaris
Phvul.003G203800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42982541-42987540 Phaseolus vulgaris
Phvul.003G203800 5.0kb downstream 5.0kb downstream 8190 true Chr03: 42974351-42982540 Phaseolus vulgaris
Phvul.003G203800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42974351-42979350 Phaseolus vulgaris
Phvul.003G203800 10.0kb upstream 10.0kb upstream 13190 true Chr03: 42979351-42992540 Phaseolus vulgaris
Phvul.003G203800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42982541-42992540 Phaseolus vulgaris
Phvul.003G203800 10.0kb downstream 10.0kb downstream 13190 true Chr03: 42969351-42982540 Phaseolus vulgaris
Phvul.003G203800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42969351-42979350 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299156 5265 Fabidae View MSA
124068435 5270 Rosid View MSA
123739181 5271 Pentapetalae View MSA
122793784 5272 Eudicot View MSA
122043471 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.6012 0.0 103.638 High High
cufflinks 10.2623 0.0 27.4194    
cufflinks 8.14193 0.0 22.1706    
cufflinks 7.90593 0.0 21.5581    
cufflinks 5.9985 0.0 16.7703    
cufflinks 7.33329 0.0 20.146    
cufflinks 6.29317 0.0 17.4366    
cufflinks 5.51094 0.0 15.4602    
cufflinks 6.90611 0.0 19.0312    
cufflinks 24.0151 0.0 62.0745   High
cufflinks 7.49124 0.0 20.5277    

0 Strain