Gene : Phvul.003G197000 P. vulgaris v2.1
Defline:  (1 of 1) K03501 - 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] (gidB, rsmG) Genomic Order:  1992
Name:  ? Phvul.003G197000 Secondary Identifier:  ? PAC:37144334
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G197000 0.5kb upstream 0.5kb upstream 8740 true Chr03: 42126812-42135551 Phaseolus vulgaris
Phvul.003G197000 0.5kb upstream 0.5kb upstream 500 false Chr03: 42135052-42135551 Phaseolus vulgaris
Phvul.003G197000 0.5kb downstream 0.5kb downstream 8740 true Chr03: 42126312-42135051 Phaseolus vulgaris
Phvul.003G197000 0.5kb downstream 0.5kb downstream 500 false Chr03: 42126312-42126811 Phaseolus vulgaris
Phvul.003G197000 1.0kb upstream 1.0kb upstream 9240 true Chr03: 42126812-42136051 Phaseolus vulgaris
Phvul.003G197000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42135052-42136051 Phaseolus vulgaris
Phvul.003G197000 1.0kb downstream 1.0kb downstream 9240 true Chr03: 42125812-42135051 Phaseolus vulgaris
Phvul.003G197000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42125812-42126811 Phaseolus vulgaris
Phvul.003G197000 2.0kb upstream 2.0kb upstream 10240 true Chr03: 42126812-42137051 Phaseolus vulgaris
Phvul.003G197000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42135052-42137051 Phaseolus vulgaris
Phvul.003G197000 2.0kb downstream 2.0kb downstream 10240 true Chr03: 42124812-42135051 Phaseolus vulgaris
Phvul.003G197000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42124812-42126811 Phaseolus vulgaris
Phvul.003G197000 5.0kb upstream 5.0kb upstream 13240 true Chr03: 42126812-42140051 Phaseolus vulgaris
Phvul.003G197000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42135052-42140051 Phaseolus vulgaris
Phvul.003G197000 5.0kb downstream 5.0kb downstream 13240 true Chr03: 42121812-42135051 Phaseolus vulgaris
Phvul.003G197000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42121812-42126811 Phaseolus vulgaris
Phvul.003G197000 10.0kb upstream 10.0kb upstream 18240 true Chr03: 42126812-42145051 Phaseolus vulgaris
Phvul.003G197000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42135052-42145051 Phaseolus vulgaris
Phvul.003G197000 10.0kb downstream 10.0kb downstream 18240 true Chr03: 42116812-42135051 Phaseolus vulgaris
Phvul.003G197000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42116812-42126811 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299127 5265 Fabidae View MSA
124063822 5270 Rosid View MSA
123747050 5271 Pentapetalae View MSA
122788459 5272 Eudicot View MSA
122046579 5273 Angiosperm View MSA
121348098 5274 Embryophyte View MSA
123428344 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.06819 0.0 4.66692    
cufflinks 1.66401 0.0 8.45794   High
cufflinks 0.578427 0.0 2.73012   Low
cufflinks 1.64592 0.0 8.7487   High
cufflinks 0.802812 0.0 4.96929    
cufflinks 1.88411 0.0 9.43839   High
cufflinks 0.821263 0.0 4.98537    
cufflinks 1.10387 0.0 6.40416    
cufflinks 0.774384 0.0 3.45357    
cufflinks 0.779307 0.0 5.40932    
cufflinks 0.998634 0.0 5.8764    

0 Strain