Gene : Phvul.003G198000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22939//PTHR22939:SF85 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // SUBFAMILY NOT NAMED Genomic Order:  2002
Name:  ? Phvul.003G198000 Secondary Identifier:  ? PAC:37144482
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G198000 0.5kb upstream 0.5kb upstream 5173 true Chr03: 42248901-42254073 Phaseolus vulgaris
Phvul.003G198000 0.5kb upstream 0.5kb upstream 500 false Chr03: 42248901-42249400 Phaseolus vulgaris
Phvul.003G198000 0.5kb downstream 0.5kb downstream 5173 true Chr03: 42249401-42254573 Phaseolus vulgaris
Phvul.003G198000 0.5kb downstream 0.5kb downstream 500 false Chr03: 42254074-42254573 Phaseolus vulgaris
Phvul.003G198000 1.0kb upstream 1.0kb upstream 5673 true Chr03: 42248401-42254073 Phaseolus vulgaris
Phvul.003G198000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42248401-42249400 Phaseolus vulgaris
Phvul.003G198000 1.0kb downstream 1.0kb downstream 5673 true Chr03: 42249401-42255073 Phaseolus vulgaris
Phvul.003G198000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42254074-42255073 Phaseolus vulgaris
Phvul.003G198000 2.0kb upstream 2.0kb upstream 6673 true Chr03: 42247401-42254073 Phaseolus vulgaris
Phvul.003G198000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42247401-42249400 Phaseolus vulgaris
Phvul.003G198000 2.0kb downstream 2.0kb downstream 6673 true Chr03: 42249401-42256073 Phaseolus vulgaris
Phvul.003G198000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42254074-42256073 Phaseolus vulgaris
Phvul.003G198000 5.0kb upstream 5.0kb upstream 9673 true Chr03: 42244401-42254073 Phaseolus vulgaris
Phvul.003G198000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42244401-42249400 Phaseolus vulgaris
Phvul.003G198000 5.0kb downstream 5.0kb downstream 9673 true Chr03: 42249401-42259073 Phaseolus vulgaris
Phvul.003G198000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42254074-42259073 Phaseolus vulgaris
Phvul.003G198000 10.0kb upstream 10.0kb upstream 14673 true Chr03: 42239401-42254073 Phaseolus vulgaris
Phvul.003G198000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42239401-42249400 Phaseolus vulgaris
Phvul.003G198000 10.0kb downstream 10.0kb downstream 14673 true Chr03: 42249401-42264073 Phaseolus vulgaris
Phvul.003G198000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42254074-42264073 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310329 5265 Fabidae View MSA
124072965 5270 Rosid View MSA
123741119 5271 Pentapetalae View MSA
122794115 5272 Eudicot View MSA
122046723 5273 Angiosperm View MSA
121346662 5274 Embryophyte View MSA
123426440 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.79041 0.0 15.7526    
cufflinks 7.91974 0.0 21.0931    
cufflinks 5.13048 0.0 14.1684   Low
cufflinks 6.07686 0.0 16.5207    
cufflinks 9.0043 0.0 23.7636    
cufflinks 5.43676 0.0 14.9359   Low
cufflinks 6.9773 0.0 18.7297    
cufflinks 8.7462 0.0 23.1112    
cufflinks 9.66439 0.0 25.4001   High
cufflinks 10.0533 0.0 26.3446   High
cufflinks 6.67292 0.0 17.9957    

0 Strain