Gene : Phvul.003G200300 P. vulgaris v2.1
Defline:  (1 of 2) K00099 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase (dxr) Genomic Order:  2025
Name:  ? Phvul.003G200300 Secondary Identifier:  ? PAC:37147875
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7560 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G200300 0.5kb upstream 0.5kb upstream 5638 true Chr03: 42527906-42533543 Phaseolus vulgaris
Phvul.003G200300 0.5kb upstream 0.5kb upstream 500 false Chr03: 42527906-42528405 Phaseolus vulgaris
Phvul.003G200300 0.5kb downstream 0.5kb downstream 5638 true Chr03: 42528406-42534043 Phaseolus vulgaris
Phvul.003G200300 0.5kb downstream 0.5kb downstream 500 false Chr03: 42533544-42534043 Phaseolus vulgaris
Phvul.003G200300 1.0kb upstream 1.0kb upstream 6138 true Chr03: 42527406-42533543 Phaseolus vulgaris
Phvul.003G200300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42527406-42528405 Phaseolus vulgaris
Phvul.003G200300 1.0kb downstream 1.0kb downstream 6138 true Chr03: 42528406-42534543 Phaseolus vulgaris
Phvul.003G200300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42533544-42534543 Phaseolus vulgaris
Phvul.003G200300 2.0kb upstream 2.0kb upstream 7138 true Chr03: 42526406-42533543 Phaseolus vulgaris
Phvul.003G200300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42526406-42528405 Phaseolus vulgaris
Phvul.003G200300 2.0kb downstream 2.0kb downstream 7138 true Chr03: 42528406-42535543 Phaseolus vulgaris
Phvul.003G200300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42533544-42535543 Phaseolus vulgaris
Phvul.003G200300 5.0kb upstream 5.0kb upstream 10138 true Chr03: 42523406-42533543 Phaseolus vulgaris
Phvul.003G200300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42523406-42528405 Phaseolus vulgaris
Phvul.003G200300 5.0kb downstream 5.0kb downstream 10138 true Chr03: 42528406-42538543 Phaseolus vulgaris
Phvul.003G200300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42533544-42538543 Phaseolus vulgaris
Phvul.003G200300 10.0kb upstream 10.0kb upstream 15138 true Chr03: 42518406-42533543 Phaseolus vulgaris
Phvul.003G200300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42518406-42528405 Phaseolus vulgaris
Phvul.003G200300 10.0kb downstream 10.0kb downstream 15138 true Chr03: 42528406-42543543 Phaseolus vulgaris
Phvul.003G200300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42533544-42543543 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041406 5273 Angiosperm View MSA
122304768 5265 Fabidae View MSA
124066605 5270 Rosid View MSA
123736883 5271 Pentapetalae View MSA
122791920 5272 Eudicot View MSA
121344534 5274 Embryophyte View MSA
123424385 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.1947 0.0 124.619 High  
cufflinks 24.4264 0.0 63.1376    
cufflinks 76.4926 0.0 210.223 High High
cufflinks 69.5561 0.0 188.316 High High
cufflinks 16.5698 0.0 43.2065   Low
cufflinks 39.9943 0.0 104.526 High  
cufflinks 27.9398 0.0 72.2862 High  
cufflinks 14.6159 0.0 38.1665   Low
cufflinks 52.7028 0.0 139.861 High  
cufflinks 30.9611 0.0 80.2115    
cufflinks 12.7539 0.0 33.7215   Low

0 Strain