Gene : Phvul.003G200800 P. vulgaris v2.1
Defline:  (1 of 1) K14555 - U3 small nucleolar RNA-associated protein 13 (UTP13, TBL3) Genomic Order:  2030
Name:  ? Phvul.003G200800 Secondary Identifier:  ? PAC:37146277
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G200800 0.5kb upstream 0.5kb upstream 10958 true Chr03: 42594912-42605869 Phaseolus vulgaris
Phvul.003G200800 0.5kb upstream 0.5kb upstream 500 false Chr03: 42594912-42595411 Phaseolus vulgaris
Phvul.003G200800 0.5kb downstream 0.5kb downstream 10958 true Chr03: 42595412-42606369 Phaseolus vulgaris
Phvul.003G200800 0.5kb downstream 0.5kb downstream 500 false Chr03: 42605870-42606369 Phaseolus vulgaris
Phvul.003G200800 1.0kb upstream 1.0kb upstream 11458 true Chr03: 42594412-42605869 Phaseolus vulgaris
Phvul.003G200800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42594412-42595411 Phaseolus vulgaris
Phvul.003G200800 1.0kb downstream 1.0kb downstream 11458 true Chr03: 42595412-42606869 Phaseolus vulgaris
Phvul.003G200800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42605870-42606869 Phaseolus vulgaris
Phvul.003G200800 2.0kb upstream 2.0kb upstream 12458 true Chr03: 42593412-42605869 Phaseolus vulgaris
Phvul.003G200800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42593412-42595411 Phaseolus vulgaris
Phvul.003G200800 2.0kb downstream 2.0kb downstream 12458 true Chr03: 42595412-42607869 Phaseolus vulgaris
Phvul.003G200800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42605870-42607869 Phaseolus vulgaris
Phvul.003G200800 5.0kb upstream 5.0kb upstream 15458 true Chr03: 42590412-42605869 Phaseolus vulgaris
Phvul.003G200800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42590412-42595411 Phaseolus vulgaris
Phvul.003G200800 5.0kb downstream 5.0kb downstream 15458 true Chr03: 42595412-42610869 Phaseolus vulgaris
Phvul.003G200800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42605870-42610869 Phaseolus vulgaris
Phvul.003G200800 10.0kb upstream 10.0kb upstream 20458 true Chr03: 42585412-42605869 Phaseolus vulgaris
Phvul.003G200800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42585412-42595411 Phaseolus vulgaris
Phvul.003G200800 10.0kb downstream 10.0kb downstream 20458 true Chr03: 42595412-42615869 Phaseolus vulgaris
Phvul.003G200800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42605870-42615869 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041178 5273 Angiosperm View MSA
122306961 5265 Fabidae View MSA
124061346 5270 Rosid View MSA
123737886 5271 Pentapetalae View MSA
122786507 5272 Eudicot View MSA
121349403 5274 Embryophyte View MSA
123428044 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.56748 0.0 12.539   Low
cufflinks 8.90675 0.0 23.3372    
cufflinks 5.60511 0.0 15.1368    
cufflinks 5.07422 0.0 13.9263    
cufflinks 8.25214 0.0 21.7297    
cufflinks 4.29977 0.0 11.9097   Low
cufflinks 11.2132 0.0 29.1172   High
cufflinks 11.9197 0.0 30.8788   High
cufflinks 12.057 0.0 31.2749   High
cufflinks 9.59407 0.0 25.0446    
cufflinks 5.79262 0.0 15.666    

0 Strain