Gene : Phvul.003G189600 P. vulgaris v2.1
Defline:  (1 of 2) 1.3.1.83 - Geranylgeranyl diphosphate reductase / Geranylgeranyl reductase Genomic Order:  1918
Name:  ? Phvul.003G189600 Secondary Identifier:  ? PAC:37145753
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5063 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5064 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G189600 0.5kb upstream 0.5kb upstream 2833 true Chr03: 41323972-41326804 Phaseolus vulgaris
Phvul.003G189600 0.5kb upstream 0.5kb upstream 500 false Chr03: 41323972-41324471 Phaseolus vulgaris
Phvul.003G189600 0.5kb downstream 0.5kb downstream 2833 true Chr03: 41324472-41327304 Phaseolus vulgaris
Phvul.003G189600 0.5kb downstream 0.5kb downstream 500 false Chr03: 41326805-41327304 Phaseolus vulgaris
Phvul.003G189600 1.0kb upstream 1.0kb upstream 3333 true Chr03: 41323472-41326804 Phaseolus vulgaris
Phvul.003G189600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 41323472-41324471 Phaseolus vulgaris
Phvul.003G189600 1.0kb downstream 1.0kb downstream 3333 true Chr03: 41324472-41327804 Phaseolus vulgaris
Phvul.003G189600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 41326805-41327804 Phaseolus vulgaris
Phvul.003G189600 2.0kb upstream 2.0kb upstream 4333 true Chr03: 41322472-41326804 Phaseolus vulgaris
Phvul.003G189600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 41322472-41324471 Phaseolus vulgaris
Phvul.003G189600 2.0kb downstream 2.0kb downstream 4333 true Chr03: 41324472-41328804 Phaseolus vulgaris
Phvul.003G189600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 41326805-41328804 Phaseolus vulgaris
Phvul.003G189600 5.0kb upstream 5.0kb upstream 7333 true Chr03: 41319472-41326804 Phaseolus vulgaris
Phvul.003G189600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 41319472-41324471 Phaseolus vulgaris
Phvul.003G189600 5.0kb downstream 5.0kb downstream 7333 true Chr03: 41324472-41331804 Phaseolus vulgaris
Phvul.003G189600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 41326805-41331804 Phaseolus vulgaris
Phvul.003G189600 10.0kb upstream 10.0kb upstream 12333 true Chr03: 41314472-41326804 Phaseolus vulgaris
Phvul.003G189600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 41314472-41324471 Phaseolus vulgaris
Phvul.003G189600 10.0kb downstream 10.0kb downstream 12333 true Chr03: 41324472-41336804 Phaseolus vulgaris
Phvul.003G189600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 41326805-41336804 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305502 5265 Fabidae View MSA
124070478 5270 Rosid View MSA
123742493 5271 Pentapetalae View MSA
122794040 5272 Eudicot View MSA
122041542 5273 Angiosperm View MSA
121345615 5274 Embryophyte View MSA
123424772 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.3654 0.0 88.2573 High  
cufflinks 150.232 0.0 473.222 High  
cufflinks 1079.85 0.0 5466.59 High High
cufflinks 127.106 0.0 388.393 High  
cufflinks 122.264 0.0 371.953 High  
cufflinks 432.936 0.0 1741.33 High High
cufflinks 4.37984 0.0 12.148   Low
cufflinks 6.38039 0.0 17.2199   Low
cufflinks 5.9318 0.0 16.0413   Low
cufflinks 19.3736 0.0 50.1116    
cufflinks 103.875 0.0 310.073 High  

0 Strain