Gene : Phvul.003G188200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31311:SF4 - GLYCOSYLTRANSFERASE 3-RELATED Genomic Order:  1904
Name:  ? Phvul.003G188200 Secondary Identifier:  ? PAC:37146093
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5936 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G188200 0.5kb upstream 0.5kb upstream 2332 true Chr03: 41197983-41200314 Phaseolus vulgaris
Phvul.003G188200 0.5kb upstream 0.5kb upstream 500 false Chr03: 41199815-41200314 Phaseolus vulgaris
Phvul.003G188200 0.5kb downstream 0.5kb downstream 2332 true Chr03: 41197483-41199814 Phaseolus vulgaris
Phvul.003G188200 0.5kb downstream 0.5kb downstream 500 false Chr03: 41197483-41197982 Phaseolus vulgaris
Phvul.003G188200 1.0kb upstream 1.0kb upstream 2832 true Chr03: 41197983-41200814 Phaseolus vulgaris
Phvul.003G188200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 41199815-41200814 Phaseolus vulgaris
Phvul.003G188200 1.0kb downstream 1.0kb downstream 2832 true Chr03: 41196983-41199814 Phaseolus vulgaris
Phvul.003G188200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 41196983-41197982 Phaseolus vulgaris
Phvul.003G188200 2.0kb upstream 2.0kb upstream 3832 true Chr03: 41197983-41201814 Phaseolus vulgaris
Phvul.003G188200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 41199815-41201814 Phaseolus vulgaris
Phvul.003G188200 2.0kb downstream 2.0kb downstream 3832 true Chr03: 41195983-41199814 Phaseolus vulgaris
Phvul.003G188200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 41195983-41197982 Phaseolus vulgaris
Phvul.003G188200 5.0kb upstream 5.0kb upstream 6832 true Chr03: 41197983-41204814 Phaseolus vulgaris
Phvul.003G188200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 41199815-41204814 Phaseolus vulgaris
Phvul.003G188200 5.0kb downstream 5.0kb downstream 6832 true Chr03: 41192983-41199814 Phaseolus vulgaris
Phvul.003G188200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 41192983-41197982 Phaseolus vulgaris
Phvul.003G188200 10.0kb upstream 10.0kb upstream 11832 true Chr03: 41197983-41209814 Phaseolus vulgaris
Phvul.003G188200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 41199815-41209814 Phaseolus vulgaris
Phvul.003G188200 10.0kb downstream 10.0kb downstream 11832 true Chr03: 41187983-41199814 Phaseolus vulgaris
Phvul.003G188200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 41187983-41197982 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311174 5265 Fabidae View MSA
124066918 5270 Rosid View MSA
123741049 5271 Pentapetalae View MSA
122787674 5272 Eudicot View MSA
122047290 5273 Angiosperm View MSA
121349054 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.9071 0.0 61.823   Low
cufflinks 37.6108 0.0 98.2833 High  
cufflinks 28.2035 0.0 73.0532    
cufflinks 89.4774 0.0 251.618 High High
cufflinks 33.9432 0.0 88.567 High  
cufflinks 33.1738 0.0 86.2966 High  
cufflinks 50.0587 0.0 133.667 High  
cufflinks 30.803 0.0 79.9826 High  
cufflinks 35.8668 0.0 93.6161 High  
cufflinks 73.6759 0.0 203.007 High High
cufflinks 38.8847 0.0 101.934 High  

0 Strain