Gene : Phvul.003G180700 P. vulgaris v2.1
Defline:  (1 of 1) K01890 - phenylalanyl-tRNA synthetase beta chain (FARSB, pheT) Genomic Order:  1831
Name:  ? Phvul.003G180700 Secondary Identifier:  ? PAC:37146365
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G180700 0.5kb upstream 0.5kb upstream 9098 true Chr03: 40330698-40339795 Phaseolus vulgaris
Phvul.003G180700 0.5kb upstream 0.5kb upstream 500 false Chr03: 40339296-40339795 Phaseolus vulgaris
Phvul.003G180700 0.5kb downstream 0.5kb downstream 9098 true Chr03: 40330198-40339295 Phaseolus vulgaris
Phvul.003G180700 0.5kb downstream 0.5kb downstream 500 false Chr03: 40330198-40330697 Phaseolus vulgaris
Phvul.003G180700 1.0kb upstream 1.0kb upstream 9598 true Chr03: 40330698-40340295 Phaseolus vulgaris
Phvul.003G180700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 40339296-40340295 Phaseolus vulgaris
Phvul.003G180700 1.0kb downstream 1.0kb downstream 9598 true Chr03: 40329698-40339295 Phaseolus vulgaris
Phvul.003G180700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 40329698-40330697 Phaseolus vulgaris
Phvul.003G180700 2.0kb upstream 2.0kb upstream 10598 true Chr03: 40330698-40341295 Phaseolus vulgaris
Phvul.003G180700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 40339296-40341295 Phaseolus vulgaris
Phvul.003G180700 2.0kb downstream 2.0kb downstream 10598 true Chr03: 40328698-40339295 Phaseolus vulgaris
Phvul.003G180700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 40328698-40330697 Phaseolus vulgaris
Phvul.003G180700 5.0kb upstream 5.0kb upstream 13598 true Chr03: 40330698-40344295 Phaseolus vulgaris
Phvul.003G180700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 40339296-40344295 Phaseolus vulgaris
Phvul.003G180700 5.0kb downstream 5.0kb downstream 13598 true Chr03: 40325698-40339295 Phaseolus vulgaris
Phvul.003G180700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 40325698-40330697 Phaseolus vulgaris
Phvul.003G180700 10.0kb upstream 10.0kb upstream 18598 true Chr03: 40330698-40349295 Phaseolus vulgaris
Phvul.003G180700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 40339296-40349295 Phaseolus vulgaris
Phvul.003G180700 10.0kb downstream 10.0kb downstream 18598 true Chr03: 40320698-40339295 Phaseolus vulgaris
Phvul.003G180700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 40320698-40330697 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302005 5265 Fabidae View MSA
124062601 5270 Rosid View MSA
123738962 5271 Pentapetalae View MSA
122792851 5272 Eudicot View MSA
122042437 5273 Angiosperm View MSA
121345306 5274 Embryophyte View MSA
123425015 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.7686 0.0 43.4719   Low
cufflinks 27.1356 0.0 70.2398    
cufflinks 21.1878 0.0 54.7692    
cufflinks 23.6995 0.0 61.2588    
cufflinks 20.0675 0.0 51.9275    
cufflinks 22.571 0.0 58.3419    
cufflinks 22.9904 0.0 59.4278    
cufflinks 27.622 0.0 71.5387    
cufflinks 28.9856 0.0 75.0402   High
cufflinks 29.3288 0.0 76.0566   High
cufflinks 21.1548 0.0 54.7176    

0 Strain