Gene : Phvul.003G293100 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2979
Name:  ? Phvul.003G293100 Secondary Identifier:  ? PAC:37147190
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G293100 0.5kb upstream 0.5kb upstream 2894 true Chr03: 53027821-53030714 Phaseolus vulgaris
Phvul.003G293100 0.5kb upstream 0.5kb upstream 500 false Chr03: 53027821-53028320 Phaseolus vulgaris
Phvul.003G293100 0.5kb downstream 0.5kb downstream 2894 true Chr03: 53028321-53031214 Phaseolus vulgaris
Phvul.003G293100 0.5kb downstream 0.5kb downstream 500 false Chr03: 53030715-53031214 Phaseolus vulgaris
Phvul.003G293100 1.0kb upstream 1.0kb upstream 3394 true Chr03: 53027321-53030714 Phaseolus vulgaris
Phvul.003G293100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 53027321-53028320 Phaseolus vulgaris
Phvul.003G293100 1.0kb downstream 1.0kb downstream 3394 true Chr03: 53028321-53031714 Phaseolus vulgaris
Phvul.003G293100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 53030715-53031714 Phaseolus vulgaris
Phvul.003G293100 2.0kb upstream 2.0kb upstream 4394 true Chr03: 53026321-53030714 Phaseolus vulgaris
Phvul.003G293100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 53026321-53028320 Phaseolus vulgaris
Phvul.003G293100 2.0kb downstream 2.0kb downstream 4394 true Chr03: 53028321-53032714 Phaseolus vulgaris
Phvul.003G293100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 53030715-53032714 Phaseolus vulgaris
Phvul.003G293100 5.0kb upstream 5.0kb upstream 7394 true Chr03: 53023321-53030714 Phaseolus vulgaris
Phvul.003G293100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 53023321-53028320 Phaseolus vulgaris
Phvul.003G293100 5.0kb downstream 5.0kb downstream 7394 true Chr03: 53028321-53035714 Phaseolus vulgaris
Phvul.003G293100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 53030715-53035714 Phaseolus vulgaris
Phvul.003G293100 10.0kb upstream 10.0kb upstream 12394 true Chr03: 53018321-53030714 Phaseolus vulgaris
Phvul.003G293100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 53018321-53028320 Phaseolus vulgaris
Phvul.003G293100 10.0kb downstream 10.0kb downstream 12394 true Chr03: 53028321-53040714 Phaseolus vulgaris
Phvul.003G293100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 53030715-53040714 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304567 5265 Fabidae View MSA
124071074 5270 Rosid View MSA
123742346 5271 Pentapetalae View MSA
122794962 5272 Eudicot View MSA
122044957 5273 Angiosperm View MSA
121352585 5274 Embryophyte View MSA
123382887 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.64207 0.0 2.22389    
cufflinks 1.57431 0.0 4.95158   High
cufflinks 0.363574 0.0 1.33337 Low Low
cufflinks 0.809566 0.0 2.76525    
cufflinks 0.793211 0.0 2.69551    
cufflinks 0.63799 0.0 2.22171    
cufflinks 0.896976 0.0 3.00756    
cufflinks 1.11639 0.0 3.64442    
cufflinks 0.896981 0.0 3.02421    
cufflinks 0.854124 0.0 2.87905    
cufflinks 0.728519 0.0 2.50462    

0 Strain