Gene : Phvul.003G292800 P. vulgaris v2.1
Defline:  (1 of 2) PF01535//PF13812//PF14432 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2976
Name:  ? Phvul.003G292800 Secondary Identifier:  ? PAC:37144867
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G292800 0.5kb upstream 0.5kb upstream 2216 true Chr03: 53013488-53015703 Phaseolus vulgaris
Phvul.003G292800 0.5kb upstream 0.5kb upstream 500 false Chr03: 53015204-53015703 Phaseolus vulgaris
Phvul.003G292800 0.5kb downstream 0.5kb downstream 2216 true Chr03: 53012988-53015203 Phaseolus vulgaris
Phvul.003G292800 0.5kb downstream 0.5kb downstream 500 false Chr03: 53012988-53013487 Phaseolus vulgaris
Phvul.003G292800 1.0kb upstream 1.0kb upstream 2716 true Chr03: 53013488-53016203 Phaseolus vulgaris
Phvul.003G292800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 53015204-53016203 Phaseolus vulgaris
Phvul.003G292800 1.0kb downstream 1.0kb downstream 2716 true Chr03: 53012488-53015203 Phaseolus vulgaris
Phvul.003G292800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 53012488-53013487 Phaseolus vulgaris
Phvul.003G292800 2.0kb upstream 2.0kb upstream 3716 true Chr03: 53013488-53017203 Phaseolus vulgaris
Phvul.003G292800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 53015204-53017203 Phaseolus vulgaris
Phvul.003G292800 2.0kb downstream 2.0kb downstream 3716 true Chr03: 53011488-53015203 Phaseolus vulgaris
Phvul.003G292800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 53011488-53013487 Phaseolus vulgaris
Phvul.003G292800 5.0kb upstream 5.0kb upstream 6716 true Chr03: 53013488-53020203 Phaseolus vulgaris
Phvul.003G292800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 53015204-53020203 Phaseolus vulgaris
Phvul.003G292800 5.0kb downstream 5.0kb downstream 6716 true Chr03: 53008488-53015203 Phaseolus vulgaris
Phvul.003G292800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 53008488-53013487 Phaseolus vulgaris
Phvul.003G292800 10.0kb upstream 10.0kb upstream 11716 true Chr03: 53013488-53025203 Phaseolus vulgaris
Phvul.003G292800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 53015204-53025203 Phaseolus vulgaris
Phvul.003G292800 10.0kb downstream 10.0kb downstream 11716 true Chr03: 53003488-53015203 Phaseolus vulgaris
Phvul.003G292800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 53003488-53013487 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308552 5265 Fabidae View MSA
124068525 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.2708 0.0 35.0389    
cufflinks 20.1794 0.0 52.3288   High
cufflinks 9.68162 0.0 26.1528   Low
cufflinks 15.3455 0.0 40.2004    
cufflinks 12.0584 0.0 32.1403    
cufflinks 16.6369 0.0 43.4149    
cufflinks 11.939 0.0 31.7096    
cufflinks 12.789 0.0 33.831    
cufflinks 12.4936 0.0 33.0913    
cufflinks 17.8302 0.0 46.4337   High
cufflinks 15.7786 0.0 41.3529    

0 Strain