Gene : Phvul.003G245900 P. vulgaris v2.1
Defline:  (1 of 3) 1.1.1.102 - 3-dehydrosphinganine reductase / KTS reductase Genomic Order:  2498
Name:  ? Phvul.003G245900 Secondary Identifier:  ? PAC:37147522
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5129 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G245900 0.5kb upstream 0.5kb upstream 3735 true Chr03: 48286939-48290673 Phaseolus vulgaris
Phvul.003G245900 0.5kb upstream 0.5kb upstream 500 false Chr03: 48286939-48287438 Phaseolus vulgaris
Phvul.003G245900 0.5kb downstream 0.5kb downstream 3735 true Chr03: 48287439-48291173 Phaseolus vulgaris
Phvul.003G245900 0.5kb downstream 0.5kb downstream 500 false Chr03: 48290674-48291173 Phaseolus vulgaris
Phvul.003G245900 1.0kb upstream 1.0kb upstream 4235 true Chr03: 48286439-48290673 Phaseolus vulgaris
Phvul.003G245900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 48286439-48287438 Phaseolus vulgaris
Phvul.003G245900 1.0kb downstream 1.0kb downstream 4235 true Chr03: 48287439-48291673 Phaseolus vulgaris
Phvul.003G245900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 48290674-48291673 Phaseolus vulgaris
Phvul.003G245900 2.0kb upstream 2.0kb upstream 5235 true Chr03: 48285439-48290673 Phaseolus vulgaris
Phvul.003G245900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 48285439-48287438 Phaseolus vulgaris
Phvul.003G245900 2.0kb downstream 2.0kb downstream 5235 true Chr03: 48287439-48292673 Phaseolus vulgaris
Phvul.003G245900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 48290674-48292673 Phaseolus vulgaris
Phvul.003G245900 5.0kb upstream 5.0kb upstream 8235 true Chr03: 48282439-48290673 Phaseolus vulgaris
Phvul.003G245900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 48282439-48287438 Phaseolus vulgaris
Phvul.003G245900 5.0kb downstream 5.0kb downstream 8235 true Chr03: 48287439-48295673 Phaseolus vulgaris
Phvul.003G245900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 48290674-48295673 Phaseolus vulgaris
Phvul.003G245900 10.0kb upstream 10.0kb upstream 13235 true Chr03: 48277439-48290673 Phaseolus vulgaris
Phvul.003G245900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 48277439-48287438 Phaseolus vulgaris
Phvul.003G245900 10.0kb downstream 10.0kb downstream 13235 true Chr03: 48287439-48300673 Phaseolus vulgaris
Phvul.003G245900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 48290674-48300673 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306231 5265 Fabidae View MSA
124050243 5270 Rosid View MSA
123736848 5271 Pentapetalae View MSA
122788663 5272 Eudicot View MSA
122042834 5273 Angiosperm View MSA
121346352 5274 Embryophyte View MSA
123423987 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.86007 0.0 29.3927    
cufflinks 3.36786 0.0 11.6528    
cufflinks 79.6819 0.0 273.801 High High
cufflinks 5.05248 0.0 19.2694    
cufflinks 12.9175 0.0 41.481    
cufflinks 35.6236 0.0 119.297 High High
cufflinks 0.813 0.0 4.00104   Low
cufflinks 0.699756 0.0 3.57186   Low
cufflinks 1.36584 0.0 5.94467    
cufflinks 1.17508 0.0 5.36119    
cufflinks 17.2982 0.0 54.7877    

0 Strain