Gene : Phvul.003G287700 P. vulgaris v2.1
Defline:  (1 of 1) K03437 - RNA methyltransferase, TrmH family (spoU) Genomic Order:  2924
Name:  ? Phvul.003G287700 Secondary Identifier:  ? PAC:37147961
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G287700 0.5kb upstream 0.5kb upstream 5040 true Chr03: 52513699-52518738 Phaseolus vulgaris
Phvul.003G287700 0.5kb upstream 0.5kb upstream 500 false Chr03: 52513699-52514198 Phaseolus vulgaris
Phvul.003G287700 0.5kb downstream 0.5kb downstream 5040 true Chr03: 52514199-52519238 Phaseolus vulgaris
Phvul.003G287700 0.5kb downstream 0.5kb downstream 500 false Chr03: 52518739-52519238 Phaseolus vulgaris
Phvul.003G287700 1.0kb upstream 1.0kb upstream 5540 true Chr03: 52513199-52518738 Phaseolus vulgaris
Phvul.003G287700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52513199-52514198 Phaseolus vulgaris
Phvul.003G287700 1.0kb downstream 1.0kb downstream 5540 true Chr03: 52514199-52519738 Phaseolus vulgaris
Phvul.003G287700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52518739-52519738 Phaseolus vulgaris
Phvul.003G287700 2.0kb upstream 2.0kb upstream 6540 true Chr03: 52512199-52518738 Phaseolus vulgaris
Phvul.003G287700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52512199-52514198 Phaseolus vulgaris
Phvul.003G287700 2.0kb downstream 2.0kb downstream 6540 true Chr03: 52514199-52520738 Phaseolus vulgaris
Phvul.003G287700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52518739-52520738 Phaseolus vulgaris
Phvul.003G287700 5.0kb upstream 5.0kb upstream 9540 true Chr03: 52509199-52518738 Phaseolus vulgaris
Phvul.003G287700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52509199-52514198 Phaseolus vulgaris
Phvul.003G287700 5.0kb downstream 5.0kb downstream 9540 true Chr03: 52514199-52523738 Phaseolus vulgaris
Phvul.003G287700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52518739-52523738 Phaseolus vulgaris
Phvul.003G287700 10.0kb upstream 10.0kb upstream 14540 true Chr03: 52504199-52518738 Phaseolus vulgaris
Phvul.003G287700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52504199-52514198 Phaseolus vulgaris
Phvul.003G287700 10.0kb downstream 10.0kb downstream 14540 true Chr03: 52514199-52528738 Phaseolus vulgaris
Phvul.003G287700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52518739-52528738 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026352 5273 Angiosperm View MSA
122305535 5265 Fabidae View MSA
124064723 5270 Rosid View MSA
123738926 5271 Pentapetalae View MSA
122787956 5272 Eudicot View MSA
121345763 5274 Embryophyte View MSA
123427917 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.69847 0.0 14.6231    
cufflinks 5.33536 0.0 16.3632    
cufflinks 10.8524 0.0 30.7077   High
cufflinks 3.35728 0.0 10.8343    
cufflinks 6.80665 0.0 20.2978    
cufflinks 10.4243 0.0 29.6894   High
cufflinks 2.4275 0.0 8.13939    
cufflinks 2.4004 0.0 8.05744    
cufflinks 1.95064 0.0 6.71555   Low
cufflinks 2.26783 0.0 7.66584   Low
cufflinks 4.91838 0.0 15.2437    

0 Strain