Gene : Phvul.003G287900 P. vulgaris v2.1
Defline:  (1 of 6) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  2926
Name:  ? Phvul.003G287900 Secondary Identifier:  ? PAC:37148189
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7560 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G287900 0.5kb upstream 0.5kb upstream 4004 true Chr03: 52553785-52557788 Phaseolus vulgaris
Phvul.003G287900 0.5kb upstream 0.5kb upstream 500 false Chr03: 52553785-52554284 Phaseolus vulgaris
Phvul.003G287900 0.5kb downstream 0.5kb downstream 4004 true Chr03: 52554285-52558288 Phaseolus vulgaris
Phvul.003G287900 0.5kb downstream 0.5kb downstream 500 false Chr03: 52557789-52558288 Phaseolus vulgaris
Phvul.003G287900 1.0kb upstream 1.0kb upstream 4504 true Chr03: 52553285-52557788 Phaseolus vulgaris
Phvul.003G287900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52553285-52554284 Phaseolus vulgaris
Phvul.003G287900 1.0kb downstream 1.0kb downstream 4504 true Chr03: 52554285-52558788 Phaseolus vulgaris
Phvul.003G287900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52557789-52558788 Phaseolus vulgaris
Phvul.003G287900 2.0kb upstream 2.0kb upstream 5504 true Chr03: 52552285-52557788 Phaseolus vulgaris
Phvul.003G287900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52552285-52554284 Phaseolus vulgaris
Phvul.003G287900 2.0kb downstream 2.0kb downstream 5504 true Chr03: 52554285-52559788 Phaseolus vulgaris
Phvul.003G287900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52557789-52559788 Phaseolus vulgaris
Phvul.003G287900 5.0kb upstream 5.0kb upstream 8504 true Chr03: 52549285-52557788 Phaseolus vulgaris
Phvul.003G287900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52549285-52554284 Phaseolus vulgaris
Phvul.003G287900 5.0kb downstream 5.0kb downstream 8504 true Chr03: 52554285-52562788 Phaseolus vulgaris
Phvul.003G287900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52557789-52562788 Phaseolus vulgaris
Phvul.003G287900 10.0kb upstream 10.0kb upstream 13504 true Chr03: 52544285-52557788 Phaseolus vulgaris
Phvul.003G287900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52544285-52554284 Phaseolus vulgaris
Phvul.003G287900 10.0kb downstream 10.0kb downstream 13504 true Chr03: 52554285-52567788 Phaseolus vulgaris
Phvul.003G287900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52557789-52567788 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301533 5265 Fabidae View MSA
124070864 5270 Rosid View MSA
123742318 5271 Pentapetalae View MSA
122794630 5272 Eudicot View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.06299 0.0 6.18709    
cufflinks 0.51368 0.0 1.80149   Low
cufflinks 0.501276 0.0 1.75891 Low Low
cufflinks 0.977091 0.0 3.20759    
cufflinks 0.640321 0.0 2.20673   Low
cufflinks 1.41816 0.0 4.43542    
cufflinks 5.29094 0.0 14.3976   High
cufflinks 3.27015 0.0 9.27939    
cufflinks 2.87195 0.0 8.265    
cufflinks 1.50447 0.0 4.69311    
cufflinks 3.4737 0.0 9.87936    

0 Strain