Gene : Phvul.003G253300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10174//PTHR10174:SF149 - RETINALDEHYDE BINDING PROTEIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  2580
Name:  ? Phvul.003G253300 Secondary Identifier:  ? PAC:37145124
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G253300 0.5kb upstream 0.5kb upstream 4746 true Chr03: 49264662-49269407 Phaseolus vulgaris
Phvul.003G253300 0.5kb upstream 0.5kb upstream 500 false Chr03: 49264662-49265161 Phaseolus vulgaris
Phvul.003G253300 0.5kb downstream 0.5kb downstream 4746 true Chr03: 49265162-49269907 Phaseolus vulgaris
Phvul.003G253300 0.5kb downstream 0.5kb downstream 500 false Chr03: 49269408-49269907 Phaseolus vulgaris
Phvul.003G253300 1.0kb upstream 1.0kb upstream 5246 true Chr03: 49264162-49269407 Phaseolus vulgaris
Phvul.003G253300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 49264162-49265161 Phaseolus vulgaris
Phvul.003G253300 1.0kb downstream 1.0kb downstream 5246 true Chr03: 49265162-49270407 Phaseolus vulgaris
Phvul.003G253300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 49269408-49270407 Phaseolus vulgaris
Phvul.003G253300 2.0kb upstream 2.0kb upstream 6246 true Chr03: 49263162-49269407 Phaseolus vulgaris
Phvul.003G253300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 49263162-49265161 Phaseolus vulgaris
Phvul.003G253300 2.0kb downstream 2.0kb downstream 6246 true Chr03: 49265162-49271407 Phaseolus vulgaris
Phvul.003G253300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 49269408-49271407 Phaseolus vulgaris
Phvul.003G253300 5.0kb upstream 5.0kb upstream 9246 true Chr03: 49260162-49269407 Phaseolus vulgaris
Phvul.003G253300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 49260162-49265161 Phaseolus vulgaris
Phvul.003G253300 5.0kb downstream 5.0kb downstream 9246 true Chr03: 49265162-49274407 Phaseolus vulgaris
Phvul.003G253300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 49269408-49274407 Phaseolus vulgaris
Phvul.003G253300 10.0kb upstream 10.0kb upstream 14246 true Chr03: 49255162-49269407 Phaseolus vulgaris
Phvul.003G253300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 49255162-49265161 Phaseolus vulgaris
Phvul.003G253300 10.0kb downstream 10.0kb downstream 14246 true Chr03: 49265162-49279407 Phaseolus vulgaris
Phvul.003G253300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 49269408-49279407 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300607 5265 Fabidae View MSA
124068737 5270 Rosid View MSA
123747971 5271 Pentapetalae View MSA
122789052 5272 Eudicot View MSA
122046588 5273 Angiosperm View MSA
121350309 5274 Embryophyte View MSA
123427540 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.6535 0.0 55.9946    
cufflinks 14.7027 0.0 44.9166   Low
cufflinks 16.6886 0.0 51.1121    
cufflinks 27.8503 0.0 83.0025    
cufflinks 21.7145 0.0 64.618    
cufflinks 17.7436 0.0 57.5878    
cufflinks 37.4782 0.0 127.288 High High
cufflinks 30.5411 0.0 90.7632 High  
cufflinks 47.3493 0.0 142.454 High High
cufflinks 15.1003 0.0 46.1614   Low
cufflinks 24.7849 0.0 73.6671    

0 Strain