Gene : Phvul.003G251500 P. vulgaris v2.1
Defline:  (1 of 1) 2.5.1.1//2.5.1.10//2.5.1.29 - Dimethylallyltranstransferase / Prenyltransferase // (2E,6E)-farnesyl diphosphate synthase / Geranyltranstransferase // Geranylgeranyl diphosphate synthase / Geranylgeranyl-PP synthetase Genomic Order:  2562
Name:  ? Phvul.003G251500 Secondary Identifier:  ? PAC:37146359
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY2OL-4 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5120 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5122 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5123 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5910 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7141 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7709 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G251500 0.5kb upstream 0.5kb upstream 2355 true Chr03: 49044595-49046949 Phaseolus vulgaris
Phvul.003G251500 0.5kb upstream 0.5kb upstream 500 false Chr03: 49046450-49046949 Phaseolus vulgaris
Phvul.003G251500 0.5kb downstream 0.5kb downstream 2355 true Chr03: 49044095-49046449 Phaseolus vulgaris
Phvul.003G251500 0.5kb downstream 0.5kb downstream 500 false Chr03: 49044095-49044594 Phaseolus vulgaris
Phvul.003G251500 1.0kb upstream 1.0kb upstream 2855 true Chr03: 49044595-49047449 Phaseolus vulgaris
Phvul.003G251500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 49046450-49047449 Phaseolus vulgaris
Phvul.003G251500 1.0kb downstream 1.0kb downstream 2855 true Chr03: 49043595-49046449 Phaseolus vulgaris
Phvul.003G251500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 49043595-49044594 Phaseolus vulgaris
Phvul.003G251500 2.0kb upstream 2.0kb upstream 3855 true Chr03: 49044595-49048449 Phaseolus vulgaris
Phvul.003G251500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 49046450-49048449 Phaseolus vulgaris
Phvul.003G251500 2.0kb downstream 2.0kb downstream 3855 true Chr03: 49042595-49046449 Phaseolus vulgaris
Phvul.003G251500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 49042595-49044594 Phaseolus vulgaris
Phvul.003G251500 5.0kb upstream 5.0kb upstream 6855 true Chr03: 49044595-49051449 Phaseolus vulgaris
Phvul.003G251500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 49046450-49051449 Phaseolus vulgaris
Phvul.003G251500 5.0kb downstream 5.0kb downstream 6855 true Chr03: 49039595-49046449 Phaseolus vulgaris
Phvul.003G251500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 49039595-49044594 Phaseolus vulgaris
Phvul.003G251500 10.0kb upstream 10.0kb upstream 11855 true Chr03: 49044595-49056449 Phaseolus vulgaris
Phvul.003G251500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 49046450-49056449 Phaseolus vulgaris
Phvul.003G251500 10.0kb downstream 10.0kb downstream 11855 true Chr03: 49034595-49046449 Phaseolus vulgaris
Phvul.003G251500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 49034595-49044594 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300633 5265 Fabidae View MSA
124062615 5270 Rosid View MSA
123750127 5271 Pentapetalae View MSA
122794006 5272 Eudicot View MSA
122045672 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.1825 0.0 93.9875 High  
cufflinks 37.5727 0.0 97.6682 High  
cufflinks 150.873 0.0 441.997 High High
cufflinks 89.378 0.0 250.789 High High
cufflinks 40.5453 0.0 106.065 High  
cufflinks 87.5552 0.0 241.492 High  
cufflinks 6.85752 0.0 18.9518   Low
cufflinks 6.54085 0.0 18.3015   Low
cufflinks 9.0855 0.0 24.546   Low
cufflinks 29.3289 0.0 75.864    
cufflinks 33.6066 0.0 87.2593    

0 Strain