Gene : Phvul.007G017200 P. vulgaris v2.1
Defline:  (1 of 425) PF01535 - PPR repeat (PPR) Genomic Order:  169
Name:  ? Phvul.007G017200 Secondary Identifier:  ? PAC:37166543
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G017200 0.5kb upstream 0.5kb upstream 2168 true Chr07: 1164241-1166408 Phaseolus vulgaris
Phvul.007G017200 0.5kb upstream 0.5kb upstream 500 false Chr07: 1165909-1166408 Phaseolus vulgaris
Phvul.007G017200 0.5kb downstream 0.5kb downstream 2168 true Chr07: 1163741-1165908 Phaseolus vulgaris
Phvul.007G017200 0.5kb downstream 0.5kb downstream 500 false Chr07: 1163741-1164240 Phaseolus vulgaris
Phvul.007G017200 1.0kb upstream 1.0kb upstream 2668 true Chr07: 1164241-1166908 Phaseolus vulgaris
Phvul.007G017200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 1165909-1166908 Phaseolus vulgaris
Phvul.007G017200 1.0kb downstream 1.0kb downstream 2668 true Chr07: 1163241-1165908 Phaseolus vulgaris
Phvul.007G017200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 1163241-1164240 Phaseolus vulgaris
Phvul.007G017200 2.0kb upstream 2.0kb upstream 3668 true Chr07: 1164241-1167908 Phaseolus vulgaris
Phvul.007G017200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 1165909-1167908 Phaseolus vulgaris
Phvul.007G017200 2.0kb downstream 2.0kb downstream 3668 true Chr07: 1162241-1165908 Phaseolus vulgaris
Phvul.007G017200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 1162241-1164240 Phaseolus vulgaris
Phvul.007G017200 5.0kb upstream 5.0kb upstream 6668 true Chr07: 1164241-1170908 Phaseolus vulgaris
Phvul.007G017200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 1165909-1170908 Phaseolus vulgaris
Phvul.007G017200 5.0kb downstream 5.0kb downstream 6668 true Chr07: 1159241-1165908 Phaseolus vulgaris
Phvul.007G017200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 1159241-1164240 Phaseolus vulgaris
Phvul.007G017200 10.0kb upstream 10.0kb upstream 11668 true Chr07: 1164241-1175908 Phaseolus vulgaris
Phvul.007G017200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 1165909-1175908 Phaseolus vulgaris
Phvul.007G017200 10.0kb downstream 10.0kb downstream 11668 true Chr07: 1154241-1165908 Phaseolus vulgaris
Phvul.007G017200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 1154241-1164240 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302013 5265 Fabidae View MSA
124063898 5270 Rosid View MSA
123736801 5271 Pentapetalae View MSA
122790461 5272 Eudicot View MSA
122047687 5273 Angiosperm View MSA
121347538 5274 Embryophyte View MSA
123380566 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.7985 0.0 18.3098   Low
cufflinks 19.0374 0.0 49.2168    
cufflinks 29.4565 0.0 76.7053   High
cufflinks 11.8641 0.0 30.9723    
cufflinks 18.5876 0.0 48.0569    
cufflinks 30.7744 0.0 80.5781   High
cufflinks 10.4291 0.0 27.2046    
cufflinks 6.62976 0.0 17.9284   Low
cufflinks 8.53451 0.0 22.5578    
cufflinks 18.4965 0.0 47.8141    
cufflinks 15.9338 0.0 41.1882    

0 Strain