Gene : Phvul.007G016300 P. vulgaris v2.1
Defline:  (1 of 8) K15601 - lysine-specific demethylase 3 [EC:1.14.11.-] (KDM3) Genomic Order:  160
Name:  ? Phvul.007G016300 Secondary Identifier:  ? PAC:37165444
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G016300 0.5kb upstream 0.5kb upstream 12460 true Chr07: 1093549-1106008 Phaseolus vulgaris
Phvul.007G016300 0.5kb upstream 0.5kb upstream 500 false Chr07: 1105509-1106008 Phaseolus vulgaris
Phvul.007G016300 0.5kb downstream 0.5kb downstream 12460 true Chr07: 1093049-1105508 Phaseolus vulgaris
Phvul.007G016300 0.5kb downstream 0.5kb downstream 500 false Chr07: 1093049-1093548 Phaseolus vulgaris
Phvul.007G016300 1.0kb upstream 1.0kb upstream 12960 true Chr07: 1093549-1106508 Phaseolus vulgaris
Phvul.007G016300 1.0kb upstream 1.0kb upstream 1000 false Chr07: 1105509-1106508 Phaseolus vulgaris
Phvul.007G016300 1.0kb downstream 1.0kb downstream 12960 true Chr07: 1092549-1105508 Phaseolus vulgaris
Phvul.007G016300 1.0kb downstream 1.0kb downstream 1000 false Chr07: 1092549-1093548 Phaseolus vulgaris
Phvul.007G016300 2.0kb upstream 2.0kb upstream 13960 true Chr07: 1093549-1107508 Phaseolus vulgaris
Phvul.007G016300 2.0kb upstream 2.0kb upstream 2000 false Chr07: 1105509-1107508 Phaseolus vulgaris
Phvul.007G016300 2.0kb downstream 2.0kb downstream 13960 true Chr07: 1091549-1105508 Phaseolus vulgaris
Phvul.007G016300 2.0kb downstream 2.0kb downstream 2000 false Chr07: 1091549-1093548 Phaseolus vulgaris
Phvul.007G016300 5.0kb upstream 5.0kb upstream 16960 true Chr07: 1093549-1110508 Phaseolus vulgaris
Phvul.007G016300 5.0kb upstream 5.0kb upstream 5000 false Chr07: 1105509-1110508 Phaseolus vulgaris
Phvul.007G016300 5.0kb downstream 5.0kb downstream 16960 true Chr07: 1088549-1105508 Phaseolus vulgaris
Phvul.007G016300 5.0kb downstream 5.0kb downstream 5000 false Chr07: 1088549-1093548 Phaseolus vulgaris
Phvul.007G016300 10.0kb upstream 10.0kb upstream 21960 true Chr07: 1093549-1115508 Phaseolus vulgaris
Phvul.007G016300 10.0kb upstream 10.0kb upstream 10000 false Chr07: 1105509-1115508 Phaseolus vulgaris
Phvul.007G016300 10.0kb downstream 10.0kb downstream 21960 true Chr07: 1083549-1105508 Phaseolus vulgaris
Phvul.007G016300 10.0kb downstream 10.0kb downstream 10000 false Chr07: 1083549-1093548 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314720 5265 Fabidae View MSA
124073545 5270 Rosid View MSA
123747808 5271 Pentapetalae View MSA
122796242 5272 Eudicot View MSA
122050393 5273 Angiosperm View MSA
121349542 5274 Embryophyte View MSA
123425923 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.95061 0.0 12.2928   Low
cufflinks 8.23191 0.0 36.8076    
cufflinks 9.70076 0.0 35.1838    
cufflinks 3.09083 0.0 11.8442   Low
cufflinks 8.09589 0.0 29.2558    
cufflinks 10.371 0.0 40.1543    
cufflinks 13.9156 0.0 50.09    
cufflinks 23.3165 0.0 90.5758   High
cufflinks 11.694 0.0 42.9736    
cufflinks 16.8041 0.0 68.4527   High
cufflinks 6.3741 0.0 27.3192    

0 Strain