Gene : Phvul.007G015300 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  150
Name:  ? Phvul.007G015300 Secondary Identifier:  ? PAC:37167438
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G015300 0.5kb upstream 0.5kb upstream 4563 true Chr07: 1050497-1055059 Phaseolus vulgaris
Phvul.007G015300 0.5kb upstream 0.5kb upstream 500 false Chr07: 1050497-1050996 Phaseolus vulgaris
Phvul.007G015300 0.5kb downstream 0.5kb downstream 4563 true Chr07: 1050997-1055559 Phaseolus vulgaris
Phvul.007G015300 0.5kb downstream 0.5kb downstream 500 false Chr07: 1055060-1055559 Phaseolus vulgaris
Phvul.007G015300 1.0kb upstream 1.0kb upstream 5063 true Chr07: 1049997-1055059 Phaseolus vulgaris
Phvul.007G015300 1.0kb upstream 1.0kb upstream 1000 false Chr07: 1049997-1050996 Phaseolus vulgaris
Phvul.007G015300 1.0kb downstream 1.0kb downstream 5063 true Chr07: 1050997-1056059 Phaseolus vulgaris
Phvul.007G015300 1.0kb downstream 1.0kb downstream 1000 false Chr07: 1055060-1056059 Phaseolus vulgaris
Phvul.007G015300 2.0kb upstream 2.0kb upstream 6063 true Chr07: 1048997-1055059 Phaseolus vulgaris
Phvul.007G015300 2.0kb upstream 2.0kb upstream 2000 false Chr07: 1048997-1050996 Phaseolus vulgaris
Phvul.007G015300 2.0kb downstream 2.0kb downstream 6063 true Chr07: 1050997-1057059 Phaseolus vulgaris
Phvul.007G015300 2.0kb downstream 2.0kb downstream 2000 false Chr07: 1055060-1057059 Phaseolus vulgaris
Phvul.007G015300 5.0kb upstream 5.0kb upstream 9063 true Chr07: 1045997-1055059 Phaseolus vulgaris
Phvul.007G015300 5.0kb upstream 5.0kb upstream 5000 false Chr07: 1045997-1050996 Phaseolus vulgaris
Phvul.007G015300 5.0kb downstream 5.0kb downstream 9063 true Chr07: 1050997-1060059 Phaseolus vulgaris
Phvul.007G015300 5.0kb downstream 5.0kb downstream 5000 false Chr07: 1055060-1060059 Phaseolus vulgaris
Phvul.007G015300 10.0kb upstream 10.0kb upstream 14063 true Chr07: 1040997-1055059 Phaseolus vulgaris
Phvul.007G015300 10.0kb upstream 10.0kb upstream 10000 false Chr07: 1040997-1050996 Phaseolus vulgaris
Phvul.007G015300 10.0kb downstream 10.0kb downstream 14063 true Chr07: 1050997-1065059 Phaseolus vulgaris
Phvul.007G015300 10.0kb downstream 10.0kb downstream 10000 false Chr07: 1055060-1065059 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308338 5265 Fabidae View MSA
124061532 5270 Rosid View MSA
123741129 5271 Pentapetalae View MSA
122786104 5272 Eudicot View MSA
122045308 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346704 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.12046 0.0 19.3709    
cufflinks 8.92438 0.0 23.8703    
cufflinks 27.24 0.0 70.6457   High
cufflinks 6.41643 0.0 17.8347    
cufflinks 5.31477 0.0 14.958    
cufflinks 14.193 0.0 36.9381   High
cufflinks 4.06621 0.0 11.6531    
cufflinks 4.30152 0.0 12.2048    
cufflinks 3.0665 0.0 9.09935   Low
cufflinks 10.8715 0.0 28.7173    
cufflinks 5.15099 0.0 14.5035    

0 Strain