Gene : Phvul.007G066400 P. vulgaris v2.1
Defline:  (1 of 2) 6.1.1.9 - Valine--tRNA ligase / Valyl-tRNA synthetase Genomic Order:  666
Name:  ? Phvul.007G066400 Secondary Identifier:  ? PAC:37165536
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G066400 0.5kb upstream 0.5kb upstream 13303 true Chr07: 5988078-6001380 Phaseolus vulgaris
Phvul.007G066400 0.5kb upstream 0.5kb upstream 500 false Chr07: 5988078-5988577 Phaseolus vulgaris
Phvul.007G066400 0.5kb downstream 0.5kb downstream 13303 true Chr07: 5988578-6001880 Phaseolus vulgaris
Phvul.007G066400 0.5kb downstream 0.5kb downstream 500 false Chr07: 6001381-6001880 Phaseolus vulgaris
Phvul.007G066400 1.0kb upstream 1.0kb upstream 13803 true Chr07: 5987578-6001380 Phaseolus vulgaris
Phvul.007G066400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 5987578-5988577 Phaseolus vulgaris
Phvul.007G066400 1.0kb downstream 1.0kb downstream 13803 true Chr07: 5988578-6002380 Phaseolus vulgaris
Phvul.007G066400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 6001381-6002380 Phaseolus vulgaris
Phvul.007G066400 2.0kb upstream 2.0kb upstream 14803 true Chr07: 5986578-6001380 Phaseolus vulgaris
Phvul.007G066400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 5986578-5988577 Phaseolus vulgaris
Phvul.007G066400 2.0kb downstream 2.0kb downstream 14803 true Chr07: 5988578-6003380 Phaseolus vulgaris
Phvul.007G066400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 6001381-6003380 Phaseolus vulgaris
Phvul.007G066400 5.0kb upstream 5.0kb upstream 17803 true Chr07: 5983578-6001380 Phaseolus vulgaris
Phvul.007G066400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 5983578-5988577 Phaseolus vulgaris
Phvul.007G066400 5.0kb downstream 5.0kb downstream 17803 true Chr07: 5988578-6006380 Phaseolus vulgaris
Phvul.007G066400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 6001381-6006380 Phaseolus vulgaris
Phvul.007G066400 10.0kb upstream 10.0kb upstream 22803 true Chr07: 5978578-6001380 Phaseolus vulgaris
Phvul.007G066400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 5978578-5988577 Phaseolus vulgaris
Phvul.007G066400 10.0kb downstream 10.0kb downstream 22803 true Chr07: 5988578-6011380 Phaseolus vulgaris
Phvul.007G066400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 6001381-6011380 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307765 5265 Fabidae View MSA
124066992 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.74358 0.0 31.0531   Low
cufflinks 19.9496 0.0 66.1733    
cufflinks 24.5412 0.0 94.0459    
cufflinks 12.5229 0.0 44.899   Low
cufflinks 22.7563 0.0 83.4895    
cufflinks 19.0061 0.0 69.992    
cufflinks 26.9477 0.0 104.939    
cufflinks 28.258 0.0 111.527 High  
cufflinks 30.3861 0.0 120.498 High High
cufflinks 23.3354 0.0 87.9766    
cufflinks 19.3194 0.0 70.6012    

0 Strain