Gene : Phvul.007G002400 P. vulgaris v2.1

Defline:  (1 of 1) PF01190//PF04554 - Pollen proteins Ole e I like (Pollen_Ole_e_I) // Extensin-like region (Extensin_2) Genomic Order:  23
Name:  ? Phvul.007G002400 Secondary Identifier:  ? PAC:37165557

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G002400 0.5kb upstream 0.5kb upstream 5511 true Chr07: 155629-161139 Phaseolus vulgaris
Phvul.007G002400 0.5kb upstream 0.5kb upstream 500 false Chr07: 155629-156128 Phaseolus vulgaris
Phvul.007G002400 0.5kb downstream 0.5kb downstream 5511 true Chr07: 156129-161639 Phaseolus vulgaris
Phvul.007G002400 0.5kb downstream 0.5kb downstream 500 false Chr07: 161140-161639 Phaseolus vulgaris
Phvul.007G002400 1.0kb upstream 1.0kb upstream 6011 true Chr07: 155129-161139 Phaseolus vulgaris
Phvul.007G002400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 155129-156128 Phaseolus vulgaris
Phvul.007G002400 1.0kb downstream 1.0kb downstream 6011 true Chr07: 156129-162139 Phaseolus vulgaris
Phvul.007G002400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 161140-162139 Phaseolus vulgaris
Phvul.007G002400 2.0kb upstream 2.0kb upstream 7011 true Chr07: 154129-161139 Phaseolus vulgaris
Phvul.007G002400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 154129-156128 Phaseolus vulgaris
Phvul.007G002400 2.0kb downstream 2.0kb downstream 7011 true Chr07: 156129-163139 Phaseolus vulgaris
Phvul.007G002400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 161140-163139 Phaseolus vulgaris
Phvul.007G002400 5.0kb upstream 5.0kb upstream 10011 true Chr07: 151129-161139 Phaseolus vulgaris
Phvul.007G002400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 151129-156128 Phaseolus vulgaris
Phvul.007G002400 5.0kb downstream 5.0kb downstream 10011 true Chr07: 156129-166139 Phaseolus vulgaris
Phvul.007G002400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 161140-166139 Phaseolus vulgaris
Phvul.007G002400 10.0kb upstream 10.0kb upstream 15011 true Chr07: 146129-161139 Phaseolus vulgaris
Phvul.007G002400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 146129-156128 Phaseolus vulgaris
Phvul.007G002400 10.0kb downstream 10.0kb downstream 15011 true Chr07: 156129-171139 Phaseolus vulgaris
Phvul.007G002400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 161140-171139 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297423 5265 Fabidae View MSA
124072659 5270 Rosid View MSA
123753028 5271 Pentapetalae View MSA
122796591 5272 Eudicot View MSA
122051631 5273 Angiosperm View MSA
121349317 5274 Embryophyte View MSA
123381274 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 174.989 0.0 551.254 High Low
cufflinks 1403.32 0.0 7824.7 High  
cufflinks 914.553 0.0 4552.51 High  
cufflinks 323.923 0.0 1259.56 High  
cufflinks 2344.97 0.0 15572.1 High  
cufflinks 1425.87 0.0 8048.99 High  
cufflinks 6473.87 0.0 66615.1 High High
cufflinks 4739.56 0.0 41854.7 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 43.0909 0.0 115.263 High Low
cufflinks 1000.61 0.0 4982.44 High  

0 Strain