Gene : Phvul.004G020800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31846:SF12 - RNA-BINDING PROTEIN YHBY Genomic Order:  243
Name:  ? Phvul.004G020800 Secondary Identifier:  ? PAC:37163316
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G020800 0.5kb upstream 0.5kb upstream 11027 true Chr04: 2408417-2419443 Phaseolus vulgaris
Phvul.004G020800 0.5kb upstream 0.5kb upstream 500 false Chr04: 2418944-2419443 Phaseolus vulgaris
Phvul.004G020800 0.5kb downstream 0.5kb downstream 11027 true Chr04: 2407917-2418943 Phaseolus vulgaris
Phvul.004G020800 0.5kb downstream 0.5kb downstream 500 false Chr04: 2407917-2408416 Phaseolus vulgaris
Phvul.004G020800 1.0kb upstream 1.0kb upstream 11527 true Chr04: 2408417-2419943 Phaseolus vulgaris
Phvul.004G020800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 2418944-2419943 Phaseolus vulgaris
Phvul.004G020800 1.0kb downstream 1.0kb downstream 11527 true Chr04: 2407417-2418943 Phaseolus vulgaris
Phvul.004G020800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 2407417-2408416 Phaseolus vulgaris
Phvul.004G020800 2.0kb upstream 2.0kb upstream 12527 true Chr04: 2408417-2420943 Phaseolus vulgaris
Phvul.004G020800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 2418944-2420943 Phaseolus vulgaris
Phvul.004G020800 2.0kb downstream 2.0kb downstream 12527 true Chr04: 2406417-2418943 Phaseolus vulgaris
Phvul.004G020800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 2406417-2408416 Phaseolus vulgaris
Phvul.004G020800 5.0kb upstream 5.0kb upstream 15527 true Chr04: 2408417-2423943 Phaseolus vulgaris
Phvul.004G020800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 2418944-2423943 Phaseolus vulgaris
Phvul.004G020800 5.0kb downstream 5.0kb downstream 15527 true Chr04: 2403417-2418943 Phaseolus vulgaris
Phvul.004G020800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 2403417-2408416 Phaseolus vulgaris
Phvul.004G020800 10.0kb upstream 10.0kb upstream 20527 true Chr04: 2408417-2428943 Phaseolus vulgaris
Phvul.004G020800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 2418944-2428943 Phaseolus vulgaris
Phvul.004G020800 10.0kb downstream 10.0kb downstream 20527 true Chr04: 2398417-2418943 Phaseolus vulgaris
Phvul.004G020800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 2398417-2408416 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309809 5265 Fabidae View MSA
124067108 5270 Rosid View MSA
123736632 5271 Pentapetalae View MSA
122792213 5272 Eudicot View MSA
122044793 5273 Angiosperm View MSA
121349891 5274 Embryophyte View MSA
123381486 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.68833 0.0 11.4159    
cufflinks 6.1412 0.0 22.206    
cufflinks 28.3046 0.0 110.945   High
cufflinks 2.05524 0.0 7.21332   Low
cufflinks 4.99674 0.0 14.8353    
cufflinks 18.1922 0.0 66.8467   High
cufflinks 4.01154 0.0 15.7206    
cufflinks 3.71597 0.0 14.4641    
cufflinks 2.81505 0.0 12.0663    
cufflinks 8.01867 0.0 30.7263    
cufflinks 3.14402 0.0 12.9829    

0 Strain