Gene : Phvul.004G011200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11822:SF5 - ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  198
Name:  ? Phvul.004G011200 Secondary Identifier:  ? PAC:37163332
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6549 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G011200 0.5kb upstream 0.5kb upstream 9254 true Chr04: 1919014-1928267 Phaseolus vulgaris
Phvul.004G011200 0.5kb upstream 0.5kb upstream 500 false Chr04: 1919014-1919513 Phaseolus vulgaris
Phvul.004G011200 0.5kb downstream 0.5kb downstream 9254 true Chr04: 1919514-1928767 Phaseolus vulgaris
Phvul.004G011200 0.5kb downstream 0.5kb downstream 500 false Chr04: 1928268-1928767 Phaseolus vulgaris
Phvul.004G011200 1.0kb upstream 1.0kb upstream 9754 true Chr04: 1918514-1928267 Phaseolus vulgaris
Phvul.004G011200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1918514-1919513 Phaseolus vulgaris
Phvul.004G011200 1.0kb downstream 1.0kb downstream 9754 true Chr04: 1919514-1929267 Phaseolus vulgaris
Phvul.004G011200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1928268-1929267 Phaseolus vulgaris
Phvul.004G011200 2.0kb upstream 2.0kb upstream 10754 true Chr04: 1917514-1928267 Phaseolus vulgaris
Phvul.004G011200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1917514-1919513 Phaseolus vulgaris
Phvul.004G011200 2.0kb downstream 2.0kb downstream 10754 true Chr04: 1919514-1930267 Phaseolus vulgaris
Phvul.004G011200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1928268-1930267 Phaseolus vulgaris
Phvul.004G011200 5.0kb upstream 5.0kb upstream 13754 true Chr04: 1914514-1928267 Phaseolus vulgaris
Phvul.004G011200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1914514-1919513 Phaseolus vulgaris
Phvul.004G011200 5.0kb downstream 5.0kb downstream 13754 true Chr04: 1919514-1933267 Phaseolus vulgaris
Phvul.004G011200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1928268-1933267 Phaseolus vulgaris
Phvul.004G011200 10.0kb upstream 10.0kb upstream 18754 true Chr04: 1909514-1928267 Phaseolus vulgaris
Phvul.004G011200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1909514-1919513 Phaseolus vulgaris
Phvul.004G011200 10.0kb downstream 10.0kb downstream 18754 true Chr04: 1919514-1938267 Phaseolus vulgaris
Phvul.004G011200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1928268-1938267 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041513 5273 Angiosperm View MSA
122304433 5265 Fabidae View MSA
124066348 5270 Rosid View MSA
123740516 5271 Pentapetalae View MSA
122791819 5272 Eudicot View MSA
121349846 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6122 0.0 28.1329    
cufflinks 11.9325 0.0 31.4352    
cufflinks 7.87223 0.0 21.3381   Low
cufflinks 16.8279 0.0 43.7634   High
cufflinks 9.61822 0.0 25.8361    
cufflinks 10.8263 0.0 28.6731    
cufflinks 11.3124 0.0 29.9006    
cufflinks 13.4307 0.0 35.0763    
cufflinks 12.1552 0.0 32.0192    
cufflinks 8.17998 0.0 22.1831   Low
cufflinks 10.5798 0.0 28.1986    

0 Strain