Gene : Phvul.004G011100 P. vulgaris v2.1
Defline:  (1 of 2) 2.7.7.8 - Polyribonucleotide nucleotidyltransferase / Polynucleotide phosphorylase Genomic Order:  197
Name:  ? Phvul.004G011100 Secondary Identifier:  ? PAC:37161570
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G011100 0.5kb upstream 0.5kb upstream 10175 true Chr04: 1908660-1918834 Phaseolus vulgaris
Phvul.004G011100 0.5kb upstream 0.5kb upstream 500 false Chr04: 1918335-1918834 Phaseolus vulgaris
Phvul.004G011100 0.5kb downstream 0.5kb downstream 10175 true Chr04: 1908160-1918334 Phaseolus vulgaris
Phvul.004G011100 0.5kb downstream 0.5kb downstream 500 false Chr04: 1908160-1908659 Phaseolus vulgaris
Phvul.004G011100 1.0kb upstream 1.0kb upstream 10675 true Chr04: 1908660-1919334 Phaseolus vulgaris
Phvul.004G011100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1918335-1919334 Phaseolus vulgaris
Phvul.004G011100 1.0kb downstream 1.0kb downstream 10675 true Chr04: 1907660-1918334 Phaseolus vulgaris
Phvul.004G011100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1907660-1908659 Phaseolus vulgaris
Phvul.004G011100 2.0kb upstream 2.0kb upstream 11675 true Chr04: 1908660-1920334 Phaseolus vulgaris
Phvul.004G011100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1918335-1920334 Phaseolus vulgaris
Phvul.004G011100 2.0kb downstream 2.0kb downstream 11675 true Chr04: 1906660-1918334 Phaseolus vulgaris
Phvul.004G011100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1906660-1908659 Phaseolus vulgaris
Phvul.004G011100 5.0kb upstream 5.0kb upstream 14675 true Chr04: 1908660-1923334 Phaseolus vulgaris
Phvul.004G011100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1918335-1923334 Phaseolus vulgaris
Phvul.004G011100 5.0kb downstream 5.0kb downstream 14675 true Chr04: 1903660-1918334 Phaseolus vulgaris
Phvul.004G011100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1903660-1908659 Phaseolus vulgaris
Phvul.004G011100 10.0kb upstream 10.0kb upstream 19675 true Chr04: 1908660-1928334 Phaseolus vulgaris
Phvul.004G011100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1918335-1928334 Phaseolus vulgaris
Phvul.004G011100 10.0kb downstream 10.0kb downstream 19675 true Chr04: 1898660-1918334 Phaseolus vulgaris
Phvul.004G011100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1898660-1908659 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305342 5265 Fabidae View MSA
124060543 5270 Rosid View MSA
123737032 5271 Pentapetalae View MSA
122787659 5272 Eudicot View MSA
122046246 5273 Angiosperm View MSA
121345190 5274 Embryophyte View MSA
123425346 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.47851 0.0 4.42964    
cufflinks 3.67002 0.0 10.0477    
cufflinks 1.33308 0.0 4.04242   Low
cufflinks 1.20572 0.0 3.73172   Low
cufflinks 2.40842 0.0 6.90221    
cufflinks 1.5869 0.0 4.721    
cufflinks 3.46124 0.0 9.53053    
cufflinks 4.12372 0.0 11.1367   High
cufflinks 4.37186 0.0 11.8251   High
cufflinks 3.06263 0.0 8.52654    
cufflinks 1.65608 0.0 4.93272    

0 Strain